Co-expression analysis

Gene ID	Contig17228_at
Gene name
Homology with Arabidopsis	Similar to At3g44070: beta-galactosidase (HF=1e+0)
Module size	16 genes
NF	0.48
%ile	66.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.81	92.8	0.95	Contig17228_at	Contig17228	-	-	1e+0	At3g44070	beta-galactosidase	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.95	HV05M01u_x_at	HV05M01u	-	-	8e+0	At5g41700	UBC8 (UBIQUITIN CONJUGATING ENZYME 8)	O.I.	H.G.	S.X.	Please select
0.59	75.8	0.95	Contig14143_s_at	Contig14143	-	-	2e-2	At3g19900	unknown protein	O.I.	H.G.	S.X.	Please select
0.58	74.9	0.95	Contig8440_at	Contig8440	-	-	5e-1	At1g09155	AtPP2-B15 (Phloem protein 2-B15)	O.I.	H.G.	S.X.	Please select
0.56	74.3	0.95	Contig9955_at	Contig9955	-	-	3e-1	At2g23310	ATRER1C1	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.95	Contig8511_at	Contig8511	-	-	5e+0	At5g44850	-	O.I.	H.G.	S.X.	Please select
0.51	67.5	0.95	Contig8375_at	Contig8375	-	-	1e-37	At3g23300	dehydration-responsive protein-related	O.I.	H.G.	S.X.	Please select
0.47	62.2	0.95	Contig3963_s_at	Contig3963	-	-	7e-39	At4g19210	ATRLI2	O.I.	H.G.	S.X.	Please select
0.47	62.2	0.96	Contig9809_at	Contig9809	-	-	3e-1	At1g63820	-	O.I.	H.G.	S.X.	Please select
0.45	59.3	0.95	Contig5777_at	Contig5777	-	-	3e-11	At5g47570	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.95	Contig1943_at	Contig1943	-	-	3e-5	At5g13510	ribosomal protein L10 family protein	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.94	Contig6506_s_at	Contig6506	-	-	6e-23	At5g27740	EMB2775 (EMBRYO DEFECTIVE 2775)	O.I.	H.G.	S.X.	Please select
0.39	50.5	0.94	Contig8956_at	Contig8956	-	-	7e-3	At1g64900	CYP89A2 (CYTOCHROME P450 89A2)	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.95	Contig4217_at	Contig4217	-	-	3e-71	At5g03290	isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putative	O.I.	H.G.	S.X.	Please select
0.34	43.6	0.94	Contig12580_at	Contig12580	-	-	1e+0	At5g28640	AN3 (ANGUSTIFOLIA 3)	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.96	Contig570_s_at	Contig570	-	-	3e-23	At1g09200	histone H3	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.0	97.2	GSM130806	JA and salinity stress, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
2.8	93.1	GSM130805	JA and salinity stress, biological rep1	GSE5605	Expression data from barley under salinity stress and JA treatment
2.8	93.1	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.7	92.7	GSM398256	Martin_3d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
2.7	92.7	GSM71146	OWB-D unstress replicate 2	GSE3170	Barley single feature polymorphisms and drought stress gene expression
2.5	91.9	GSM71147	OWB-D unstress replicate 3	GSE3170	Barley single feature polymorphisms and drought stress gene expression
2.4	91.4	GSM160815	drought control rep3	GSE6990	Barley drought stress
2.4	91.4	GSM372955	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.2	90.3	GSM261032	Dicktoo control-rep3	GSE10329	Low temperature stress in cv. Dicktoo
2.1	89.7	GSM398279	Moroc9-75_3d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage