Co-expression analysis

Gene ID Contig17204_at
Gene name
Homology with ArabidopsisSimilar to At5g53030: unknown protein (HF=6e+0)
Module size 8 genes
NF 0.31
%ile 40.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5774.90.85Contig17204_atContig17204--6e+0At5g53030unknown proteinO.I.H.G.S.X.
0.6784.70.90Contig15052_atContig15052--5e-23At3g48750CDC2 (CELL DIVISION CONTROL 2)O.I.H.G.S.X.
0.4458.90.90HV_CEb0012K14r2_x_atHV_CEb0012K14r2--2e+0At5g19030RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.3138.60.91Contig25029_atContig25029--4e+0At3g48231LCR48 (Low-molecular-weight cysteine-rich 48)O.I.H.G.S.X.
0.2732.10.91Contig5571_atContig5571--6e-8At2g47590PHR2 (photolyase/blue-light receptor 2)O.I.H.G.S.X.
0.2122.60.90Contig8128_atContig8128--4e-31At5g01240amino acid permease, putativeO.I.H.G.S.X.
0.1818.20.90Contig19360_atContig19360--2e-1At3g61590HWS (HAWAIIAN SKIRT)O.I.H.G.S.X.
0.1514.10.91HVSMEc0013C11r2_atHVSMEc0013C11r2--7e-2At2g05600-O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.799.5GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
7.798.6GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
6.498.1GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
5.097.2GSM213441Barley seeds control in Hoagland solution for 12hrGSE8618P. aeruginosa virulent factor to barleyLink to GEO
5.097.2GSM261022ABA-Control-rep2GSE10328ABA experimentLink to GEO
4.696.8GSM146358Golden Promise Root Control, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
4.296.3GSM261021ABA-Control-rep1GSE10328ABA experimentLink to GEO
3.595.1GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.394.6GSM161200cold treatment rep1GSE6993Barley low temperature stressLink to GEO
3.294.3GSM238438Embryo 72 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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