Co-expression analysis

Gene ID	Contig17141_at
Gene name
Homology with Arabidopsis	Similar to At1g56350: peptide chain release factor, putative (HF=1e-26)
Module size	6 genes
NF	0.61
%ile	83.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	78.7	0.90	Contig17141_at	Contig17141	-	-	1e-26	At1g56350	peptide chain release factor, putative	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.93	Contig15545_at	Contig15545	-	-	5e-1	At1g13740	AFP2 (ABI FIVE BINDING PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.94	Contig13784_at	Contig13784	-	-	4e-1	At2g03610	F-box family protein	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.93	Contig6395_at	Contig6395	-	-	7e+0	At5g23750	remorin family protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.96	HVSMEg0015E17r2_at	HVSMEg0015E17r2	-	-	8e-1	At2g25120	bromo-adjacent homology (BAH) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.89	EBro08_SQ004_A23_at	EBro08_SQ004_A23	-	-	4e+0	At5g66390	peroxidase 72 (PER72) (P72) (PRXR8)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
21.5	99.8	GSM261042	before 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
13.7	99.5	GSM261044	before 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
13.3	99.4	GSM261043	before 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.9	97.9	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM282022	Malting_day4_Merit_rep4	GSE11200	Expression data from malting barley seeds
3.6	95.3	GSM382237	Root_Control3	GSE15295	Mercury toxicity in barley roots
3.4	94.8	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
3.3	94.6	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.1	94.1	GSM146357	Golden Promise Root Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
2.9	93.4	GSM146366	Maythorpe Root Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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