Co-expression analysis

Gene ID	Contig17124_at
Gene name
Homology with Arabidopsis	Similar to At3g20180: metal ion binding (HF=6e-1)
Module size	6 genes
NF	0.49
%ile	68.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	90.8	0.91	Contig17124_at	Contig17124	-	-	6e-1	At3g20180	metal ion binding	O.I.	H.G.	S.X.	Please select
0.80	92.5	0.90	Contig16368_at	Contig16368	-	-	1e-40	At3g29320	glucan phosphorylase, putative	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.89	Contig5607_s_at	Contig5607	-	-	4e-1	At3g17160	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.93	Contig12756_at	Contig12756	-	-	1e-21	At2g34090	MEE18 (maternal effect embryo arrest 18)	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.94	Contig25469_at	Contig25469	-	-	4e+0	At4g39200	40S ribosomal protein S25 (RPS25E)	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.88	HVSMEc0009P17f_s_at	HVSMEc0009P17f	-	-	1e-2	At3g10280	KCS14 (3-KETOACYL-COA SYNTHASE 14)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
53.8	100.0	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
14.1	99.5	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.8	98.3	GSM261025	ABA-Early-rep2	GSE10328	ABA experiment
5.0	97.2	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.3	96.4	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
4.0	96.0	GSM372954	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.6	95.3	GSM213436	Barley seeds with P. aeruginosa PAO1 for 12hr	GSE8618	P. aeruginosa virulent factor to barley
3.6	95.3	GSM398250	Martin_0d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.4	94.8	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.2	94.3	GSM213443	Barley seeds with P. aeruginosa PA5021 mutant for 12hr	GSE8618	P. aeruginosa virulent factor to barley

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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