CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig17106_at

Gene name
Homology with Arabidopsis Similar to At1g26890: - (HF=5e+0)

Module size 6 genes

NF 0.32

%ile 43.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.71 87.1 0.96 Contig17106_at Contig17106 - - 5e+0 At1g26890 - O.I. H.G. S.X.
0.44 58.9 0.96 HS17M12u_s_at HS17M12u - - 4e+0 At3g23250 MYB15 (MYB DOMAIN PROTEIN 15) O.I. H.G. S.X.
0.36 47.1 0.96 Contig5369_at Contig5369 - - 1e-1 At3g46150 unknown protein O.I. H.G. S.X.
0.32 40.3 0.96 Contig9706_at Contig9706 - - 2e-4 At2g33610 ATSWI3B (SWITCH SUBUNIT 3) O.I. H.G. S.X.
0.26 30.4 0.96 Contig11977_at Contig11977 - - 6e-1 At5g62490 ATHVA22B O.I. H.G. S.X.
0.15 14.1 0.96 Contig12784_at Contig12784 - - 2e-10 At1g28520 VOZ1 (VASCULAR PLANT ONE ZINC FINGER PROTEIN) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.71	87.1	0.96	Contig17106_at	Contig17106	-	-	5e+0	At1g26890	-	O.I.	H.G.	S.X.
0.44	58.9	0.96	HS17M12u_s_at	HS17M12u	-	-	4e+0	At3g23250	MYB15 (MYB DOMAIN PROTEIN 15)	O.I.	H.G.	S.X.
0.36	47.1	0.96	Contig5369_at	Contig5369	-	-	1e-1	At3g46150	unknown protein	O.I.	H.G.	S.X.
0.32	40.3	0.96	Contig9706_at	Contig9706	-	-	2e-4	At2g33610	ATSWI3B (SWITCH SUBUNIT 3)	O.I.	H.G.	S.X.
0.26	30.4	0.96	Contig11977_at	Contig11977	-	-	6e-1	At5g62490	ATHVA22B	O.I.	H.G.	S.X.
0.15	14.1	0.96	Contig12784_at	Contig12784	-	-	2e-10	At1g28520	VOZ1 (VASCULAR PLANT ONE ZINC FINGER PROTEIN)	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.50	66.9	0.95	Contig11155_at	Contig11155	-	-	8e-1	At4g15140	unknown protein	O.I.	H.G.	S.X.
0.50	66.9	0.96	HVSMEk0006L08r2_s_at	HVSMEk0006L08r2	-	-	3e+0	Atmg00370	-	O.I.	H.G.	S.X.
0.50	66.9	0.96	Contig14126_at	Contig14126	-	-	2e-6	At1g65700	small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative	O.I.	H.G.	S.X.
0.46	61.0	0.95	Contig15357_at	Contig15357	-	-	3e-1	At1g24440	protein binding / zinc ion binding	O.I.	H.G.	S.X.
0.44	58.9	0.96	Contig14955_at	Contig14955	-	-	7e-2	At4g33870	peroxidase, putative	O.I.	H.G.	S.X.
0.44	58.9	0.96	Contig14290_at	Contig14290	-	-	9e-15	At5g57030	LUT2 (LUTEIN DEFICIENT 2)	O.I.	H.G.	S.X.
0.43	56.4	0.95	Contig8430_at	Contig8430	-	-	6e-5	At5g01290	mRNA guanylyltransferase/ phosphatase/ polynucleotide 5'-phosphatase/ protein tyrosine phosphatase/ protein tyrosine/serine/threonine phosphatase	O.I.	H.G.	S.X.
0.40	53.1	0.93	Contig16756_at	Contig16756	-	-	6e+0	At5g55710	-	O.I.	H.G.	S.X.
0.40	53.1	0.94	Contig1528_s_at	Contig1528	-	-	5e-1	At5g26700	germin-like protein, putative	O.I.	H.G.	S.X.
0.40	53.1	0.95	HS07H05u_s_at	HS07H05u	-	-	1e-6	At2g29080	ftsh3 (FtsH protease 3)	O.I.	H.G.	S.X.
0.40	53.1	0.96	Contig9248_s_at	Contig9248	-	-	1e+0	At3g15110	unknown protein	O.I.	H.G.	S.X.
0.40	53.1	0.96	Contig11980_at	Contig11980	-	-	3e-2	At3g57920	SPL15 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 15)	O.I.	H.G.	S.X.
0.38	49.5	0.92	Contig16007_at	Contig16007	-	-	2e-4	At5g43810	ZLL (ZWILLE)	O.I.	H.G.	S.X.
0.38	49.5	0.94	Contig21425_at	Contig21425	-	-	6e+0	At5g13340	unknown protein	O.I.	H.G.	S.X.
0.36	47.1	0.95	Contig24931_at	Contig24931	-	-	2e-9	At1g30330	ARF6 (AUXIN RESPONSE FACTOR 6)	O.I.	H.G.	S.X.
0.35	45.1	0.93	Contig9048_s_at	Contig9048	-	-	4e-2	At3g13500	unknown protein	O.I.	H.G.	S.X.
0.34	43.6	0.93	Contig7545_at	Contig7545	-	-	3e-3	At5g18400	unknown protein	O.I.	H.G.	S.X.
0.33	42.6	0.93	Contig8428_at	Contig8428	-	-	4e-40	At3g07160	ATGSL10 (glucan synthase-like 10)	O.I.	H.G.	S.X.
0.33	42.6	0.94	Contig5597_s_at	Contig5597	-	-	4e+0	At5g54095	unknown protein	O.I.	H.G.	S.X.
0.33	42.6	0.94	Contig23562_at	Contig23562	-	-	2e+0	At1g57780	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.
0.33	42.6	0.94	HVSMEm0008J11r2_at	HVSMEm0008J11r2	-	-	4e+0	At1g56233	-	O.I.	H.G.	S.X.
0.33	42.6	0.95	Contig13237_at	Contig13237	-	-	1e-11	At3g56430	-	O.I.	H.G.	S.X.
0.33	42.6	0.95	Contig26049_at	Contig26049	-	-	2e+0	At4g17340	TIP2	O.I.	H.G.	S.X.
0.33	42.6	0.96	Contig22600_at	Contig22600	-	-	5e-1	At4g23470	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.
0.33	42.6	0.96	Contig15850_at	Contig15850	-	-	8e-1	At5g16580	BGLU2 (BETA GLUCOSIDASE 2)	O.I.	H.G.	S.X.
0.33	42.6	0.96	Contig5327_at	Contig5327	-	-	1e-16	At3g07770	ATP binding	O.I.	H.G.	S.X.
0.33	42.6	0.96	Contig10279_at	Contig10279	-	-	3e+0	At1g52830	IAA6 (INDOLE-3-ACETIC ACID 6)	O.I.	H.G.	S.X.
0.32	40.3	0.92	Contig12804_at	Contig12804	-	-	1e-1	At4g17460	HAT1	O.I.	H.G.	S.X.
0.32	40.3	0.93	Contig2268_s_at	Contig2268	-	-	2e-17	At3g09630	60S ribosomal protein L4/L1 (RPL4A)	O.I.	H.G.	S.X.
0.31	38.6	0.93	Contig4682_at	Contig4682	-	-	6e-5	At2g43970	La domain-containing protein	O.I.	H.G.	S.X.
0.31	38.6	0.94	Contig12811_at	Contig12811	-	-	3e-5	At5g01200	myb family transcription factor	O.I.	H.G.	S.X.
0.31	38.6	0.96	Contig5960_at	Contig5960	-	-	1e-16	At3g18880	ribosomal protein S17 family protein	O.I.	H.G.	S.X.
0.30	37.0	0.96	Contig16432_at	Contig16432	-	-	1e-2	At3g12250	TGA6 (TGACG MOTIF-BINDING FACTOR 6)	O.I.	H.G.	S.X.
0.29	35.5	0.94	HVSMEk0012K15r2_s_at	HVSMEk0012K15r2	-	-	8e-4	At3g29635	transferase family protein	O.I.	H.G.	S.X.
0.29	35.5	0.95	Contig11012_at	Contig11012	-	-	7e-6	At3g04040	unknown protein	O.I.	H.G.	S.X.
0.29	35.5	0.95	Contig7584_at	Contig7584	-	-	2e+0	At1g23660	unknown protein	O.I.	H.G.	S.X.
0.29	35.5	0.96	Contig9449_s_at	Contig9449	-	-	3e-18	At2g27350	OTU-like cysteine protease family protein	O.I.	H.G.	S.X.
0.27	32.1	0.94	Contig24230_at	Contig24230	-	-	3e-1	At4g21610	LOL2 (LSD ONE LIKE 2)	O.I.	H.G.	S.X.
0.27	32.1	0.94	Contig10756_x_at	Contig10756	-	-	2e+1	At5g53820	unknown protein	O.I.	H.G.	S.X.
0.27	32.1	0.96	Contig20030_at	Contig20030	-	-	6e+0	At3g47965	unknown protein	O.I.	H.G.	S.X.
0.26	30.4	0.95	Contig17383_at	Contig17383	-	-	3e-1	At5g54340	zinc finger (C2H2 type) protein-related	O.I.	H.G.	S.X.
0.26	30.4	0.92	Contig1559_at	Contig1559	-	-	1e-15	At3g59540	60S ribosomal protein L38 (RPL38B)	O.I.	H.G.	S.X.
0.25	28.9	0.93	HU07O24r_s_at	HU07O24r	-	-	3e+0	At3g12870	unknown protein	O.I.	H.G.	S.X.
0.25	28.9	0.94	Contig5243_at	Contig5243	-	-	2e-2	At1g75550	glycine-rich protein	O.I.	H.G.	S.X.
0.25	28.9	0.94	Contig4789_at	Contig4789	-	-	1e-14	At5g42790	PAF1	O.I.	H.G.	S.X.
0.25	28.9	0.95	Contig7963_at	Contig7963	-	-	9e-12	At5g63310	NDPK2 (NUCLEOSIDE DIPHOSPHATE KINASE 2)	O.I.	H.G.	S.X.
0.25	28.9	0.95	Contig18260_at	Contig18260	-	-	2e-15	At1g22150	SULTR1	O.I.	H.G.	S.X.
0.25	28.9	0.96	Contig15347_at	Contig15347	-	-	3e-2	At1g45230	defective chloroplasts and leaves protein-related / DCL protein-related	O.I.	H.G.	S.X.
0.25	28.9	0.96	Contig19283_at	Contig19283	-	-	2e+1	Atmg00840	-	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
17.9 99.7 GSM282038 Malting_kilned_Morex_rep1 GSE11200 Expression data from malting barley seeds
14.2 99.5 GSM282040 Malting_kilned_Morex_rep2 GSE11200 Expression data from malting barley seeds
11.6 99.3 GSM238410 Pericarp 8DAF; seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
8.5 98.8 GSM282030 Malting_day4_Harrington_rep2 GSE11200 Expression data from malting barley seeds
5.9 97.9 GSM282033 Malting_day4_Harrington_rep4 GSE11200 Expression data from malting barley seeds
4.7 96.9 GSM238412 Endosperm 4DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
4.6 96.8 GSM238411 Pericarp 8DAF; seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
4.3 96.4 GSM372955 genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.7 95.5 GSM282032 Malting_day1_Morex_rep1 GSE11200 Expression data from malting barley seeds
3.6 95.3 GSM238431 Embryo 25DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
17.9	99.7	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
14.2	99.5	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds
11.6	99.3	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
8.5	98.8	GSM282030	Malting_day4_Harrington_rep2	GSE11200	Expression data from malting barley seeds
5.9	97.9	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
4.7	96.9	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.6	96.8	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.3	96.4	GSM372955	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.7	95.5	GSM282032	Malting_day1_Morex_rep1	GSE11200	Expression data from malting barley seeds
3.6	95.3	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	Contig17106_at
Gene name
Homology with Arabidopsis	Similar to At1g26890: - (HF=5e+0)
Module size	6 genes
NF	0.32
%ile	43.2

Co-expression analysis

Gene ID Contig17106_at Gene name Homology with ArabidopsisSimilar to At1g26890: - (HF=5e+0) Module size 6 genes NF 0.32 %ile 43.2

Co-expressed genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Contig17106_at

Gene name
Homology with Arabidopsis Similar to At1g26890: - (HF=5e+0)

Module size 6 genes

NF 0.32

%ile 43.2

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays