Co-expression analysis

Gene ID	Contig17106_at
Gene name
Homology with Arabidopsis	Similar to At1g26890: - (HF=5e+0)
Module size	6 genes
NF	0.32
%ile	43.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	87.1	0.96	Contig17106_at	Contig17106	-	-	5e+0	At1g26890	-	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.96	HS17M12u_s_at	HS17M12u	-	-	4e+0	At3g23250	MYB15 (MYB DOMAIN PROTEIN 15)	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.96	Contig5369_at	Contig5369	-	-	1e-1	At3g46150	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.96	Contig9706_at	Contig9706	-	-	2e-4	At2g33610	ATSWI3B (SWITCH SUBUNIT 3)	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.96	Contig11977_at	Contig11977	-	-	6e-1	At5g62490	ATHVA22B	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.96	Contig12784_at	Contig12784	-	-	2e-10	At1g28520	VOZ1 (VASCULAR PLANT ONE ZINC FINGER PROTEIN)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
17.9	99.7	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
14.2	99.5	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds
11.6	99.3	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
8.5	98.8	GSM282030	Malting_day4_Harrington_rep2	GSE11200	Expression data from malting barley seeds
5.9	97.9	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
4.7	96.9	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.6	96.8	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.3	96.4	GSM372955	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.7	95.5	GSM282032	Malting_day1_Morex_rep1	GSE11200	Expression data from malting barley seeds
3.6	95.3	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

A co-expression module including the maize gene, Zm.15861.1.A1_at, orthologous to the query gene, Contig17106_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.95	99.6	Zm.15861.1.A1_at	At1g26890	lil3 protein	-	8e-2	At5g47110	lil3 protein, putative	O.I.	H.G.	S.X.	Please select
0.59	76.1	Zm.1315.1.A1_at	At1g26890	-	-	2e-3	At4g14630	GLP9 (GERMIN-LIKE PROTEIN 9)	O.I.	H.G.	S.X.	Please select
0.42	51.3	Zm.2885.1.A1_at	At1g26890	fb2	-	5e+0	At5g33355	-	O.I.	H.G.	S.X.	Please select
0.42	51.3	ZmAffx.1284.1.S1_at	At1g26890	-	-	6e-1	At4g36020	CSDP1 (cold shock domain protein 1)	O.I.	H.G.	S.X.	Please select
0.41	49.7	Zm.15084.1.A1_at	At1g26890	-	-	6e-2	At1g62240	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	45.6	Zm.12994.1.S1_at	At1g26890	-	-	7e-4	At5g60980	nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.39	45.6	Zm.9384.1.A1_at	At1g26890	-	-	6e+0	At4g28170	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	41.3	Zm.13623.1.A1_at	At1g26890	-	-	1e+0	At5g11600	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	36.0	Zm.2882.1.A1_at	At1g26890	hypothetical protein LOC100191740	-	3e-10	At5g06090	GPAT7 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 7)	O.I.	H.G.	S.X.	Please select
0.32	33.4	Zm.7429.1.A1_at	At1g26890	hypothetical protein LOC100279582	-	2e-1	At4g32285	epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related	O.I.	H.G.	S.X.	Please select
0.30	29.8	Zm.13035.1.A1_at	At1g26890	NOL1R	-	6e+0	At5g05530	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.29	28.1	Zm.369.1.A1_at	At1g26890	low molecular weight heat shock protein precursor	-	9e-3	At4g25200	ATHSP23.6-MITO (MITOCHONDRION-LOCALIZED SMALL HEAT SHOCK PROTEIN 23.6)	O.I.	H.G.	S.X.	Please select
0.29	28.1	Zm.19174.1.A1_at	At1g26890	NAD(P)H-dependent oxidoreductase	-	5e+0	At4g00920	COP1-interacting protein-related	O.I.	H.G.	S.X.	Please select
0.28	28.1	Zm.1697.1.S1_at	At1g26890	Protein phosphatase 2C	-	5e-33	At4g31750	WIN2 (HOPW1-1-INTERACTING 2)	O.I.	H.G.	S.X.	Please select
0.27	24.6	Zm.18287.1.A1_at	At1g26890	hypothetical protein LOC100193796	-	4e-32	At5g36700	PGLP1 (2-PHOSPHOGLYCOLATE PHOSPHATASE 1)	O.I.	H.G.	S.X.	Please select
0.27	24.6	ZmAffx.199.1.A1_at	At1g26890	-	-	7e-1	At1g14687	AtHB32 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 32)	O.I.	H.G.	S.X.	Please select
0.26	22.7	Zm.584.4.S1_at	At1g26890	pericarp color1	-	3e-8	At4g38620	MYB4	O.I.	H.G.	S.X.	Please select
0.26	22.7	Zm.14566.1.S1_at	At1g26890	photosystem II 11 kD protein	-	4e-1	At2g05510	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.25	21.3	Zm.604.1.A1_at	At1g26890	plasma membrane integral protein ZmPIP1-6	-	1e-5	At1g01620	PIP1C (PLASMA MEMBRANE INTRINSIC PROTEIN 1C)	O.I.	H.G.	S.X.	Please select
0.24	19.8	Zm.10839.1.S1_at	At1g26890	-	-	4e+0	At5g08290	YLS8	O.I.	H.G.	S.X.	Please select
0.24	19.8	Zm.6778.2.S1_at	At1g26890	-	-	8e-4	At4g27230	HTA2 (histone H2A)	O.I.	H.G.	S.X.	Please select
0.23	18.6	Zm.18486.1.A1_at	At1g26890	hypothetical protein LOC100276684	-	1e-1	At2g47760	ALG3	O.I.	H.G.	S.X.	Please select
0.22	16.9	Zm.4338.3.S1_at	At1g26890	-	-	3e+0	At5g27170	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	16.9	Zm.10261.1.S1_at	At1g26890	-	-	1e-17	At3g47460	ATSMC2	O.I.	H.G.	S.X.	Please select
0.22	16.9	Zm.17338.4.A1_at	At1g26890	Hypothetical protein LOC100193489	-	3e+0	At5g27820	ribosomal protein L18 family protein	O.I.	H.G.	S.X.	Please select
0.20	14.2	Zm.519.1.S1_at	At1g26890	cellulose synthase3	-	2e-113	At4g32410	CESA1 (CELLULOSE SYNTHASE 1)	O.I.	H.G.	S.X.	Please select
0.20	14.2	Zm.17904.1.S1_at	At1g26890	-	-	3e-1	At2g04790	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	14.2	Zm.854.1.A1_at	At1g26890	vesicle-associated membrane protein-associated protein A	-	1e-2	At4g00170	vesicle-associated membrane family protein / VAMP family protein	O.I.	H.G.	S.X.	Please select
0.18	11.6	Zm.19347.1.S1_at	At1g26890	hypothetical protein LOC100217103	-	6e-1	At4g36170	unknown protein	O.I.	H.G.	S.X.	Please select
0.18	11.6	Zm.18994.2.S1_at	At1g26890	-	-	1e+1	At5g03495	nucleotide binding	O.I.	H.G.	S.X.	Please select
0.18	11.6	Zm.16970.1.S1_at	At1g26890	-	-	3e+0	At2g41070	EEL (ENHANCED EM LEVEL)	O.I.	H.G.	S.X.	Please select
0.17	10.6	Zm.4619.2.A1_a_at	At1g26890	hypothetical protein LOC100273548	-	5e-29	At4g31120	SKB1 (SHK1 BINDING PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.17	10.6	Zm.17230.1.A1_at	At1g26890	-	-	8e+0	At4g08895	inorganic phosphate transporter family protein	O.I.	H.G.	S.X.	Please select
0.17	10.6	Zm.2770.1.A1_at	At1g26890	hypothetical protein LOC100192561	-	1e+0	At2g17860	pathogenesis-related thaumatin family protein	O.I.	H.G.	S.X.	Please select
0.14	7.7	Zm.5851.14.A1_at	At1g26890	-	-	9e-2	At1g75270	DHAR2 (DEHYDROASCORBATE REDUCTASE 2)	O.I.	H.G.	S.X.	Please select
0.14	7.7	Zm.3077.2.S1_x_at	At1g26890	calmodulin	-	4e-97	At3g43810	CAM7 (CALMODULIN 7)	O.I.	H.G.	S.X.	Please select
0.12	5.9	Zm.17567.1.A1_at	At1g26890	-	-	2e-14	At1g45150	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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