Co-expression analysis

Gene ID	Contig17106_at
Gene name
Homology with Arabidopsis	Similar to At1g26890: - (HF=5e+0)
Module size	6 genes
NF	0.32
%ile	43.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	87.1	0.96	Contig17106_at	Contig17106	-	-	5e+0	At1g26890	-	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.96	HS17M12u_s_at	HS17M12u	-	-	4e+0	At3g23250	MYB15 (MYB DOMAIN PROTEIN 15)	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.96	Contig5369_at	Contig5369	-	-	1e-1	At3g46150	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.96	Contig9706_at	Contig9706	-	-	2e-4	At2g33610	ATSWI3B (SWITCH SUBUNIT 3)	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.96	Contig11977_at	Contig11977	-	-	6e-1	At5g62490	ATHVA22B	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.96	Contig12784_at	Contig12784	-	-	2e-10	At1g28520	VOZ1 (VASCULAR PLANT ONE ZINC FINGER PROTEIN)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
17.9	99.7	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
14.2	99.5	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds
11.6	99.3	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
8.5	98.8	GSM282030	Malting_day4_Harrington_rep2	GSE11200	Expression data from malting barley seeds
5.9	97.9	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
4.7	96.9	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.6	96.8	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.3	96.4	GSM372955	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.7	95.5	GSM282032	Malting_day1_Morex_rep1	GSE11200	Expression data from malting barley seeds
3.6	95.3	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

A co-expression module including the grape gene, 1617521_at, orthologous to the query gene, Contig17106_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	1617521_at	At1g26890	hypothetical protein LOC100263204	-	1e+0	At1g66030	CYP96A14P	O.I.	H.G.	S.X.	Please select
0.50	72.7	1616208_at	At1g26890	hypothetical protein LOC100252980	-	5e-3	At3g11020	DREB2B (DRE/CRT-BINDING PROTEIN 2B)	O.I.	H.G.	S.X.	Please select
0.44	64.1	1607532_at	At1g26890	hypothetical protein LOC100252127	-	3e-5	At4g10450	60S ribosomal protein L9 (RPL90D)	O.I.	H.G.	S.X.	Please select
0.33	45.7	1610904_at	At1g26890	hypothetical protein LOC100251772	-	1e-26	At1g65650	UCH2	O.I.	H.G.	S.X.	Please select
0.23	27.5	1616196_at	At1g26890	hypothetical protein LOC100257603	-	2e-59	At4g32150	ATVAMP711 (ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 711)	O.I.	H.G.	S.X.	Please select
0.14	14.4	1614941_s_at	At1g26890	hypothetical protein LOC100265806	-	9e-17	At5g64350	FKBP12 (FK506-BINDING PROTEIN)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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