CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig17106_at

Gene name
Homology with Arabidopsis Similar to At1g26890: - (HF=5e+0)

Module size 6 genes

NF 0.32

%ile 43.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.71 87.1 0.96 Contig17106_at Contig17106 - - 5e+0 At1g26890 - O.I. H.G. S.X.
0.44 58.9 0.96 HS17M12u_s_at HS17M12u - - 4e+0 At3g23250 MYB15 (MYB DOMAIN PROTEIN 15) O.I. H.G. S.X.
0.36 47.1 0.96 Contig5369_at Contig5369 - - 1e-1 At3g46150 unknown protein O.I. H.G. S.X.
0.32 40.3 0.96 Contig9706_at Contig9706 - - 2e-4 At2g33610 ATSWI3B (SWITCH SUBUNIT 3) O.I. H.G. S.X.
0.26 30.4 0.96 Contig11977_at Contig11977 - - 6e-1 At5g62490 ATHVA22B O.I. H.G. S.X.
0.15 14.1 0.96 Contig12784_at Contig12784 - - 2e-10 At1g28520 VOZ1 (VASCULAR PLANT ONE ZINC FINGER PROTEIN) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
17.9 99.7 GSM282038 Malting_kilned_Morex_rep1 GSE11200 Expression data from malting barley seeds
14.2 99.5 GSM282040 Malting_kilned_Morex_rep2 GSE11200 Expression data from malting barley seeds
11.6 99.3 GSM238410 Pericarp 8DAF; seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
8.5 98.8 GSM282030 Malting_day4_Harrington_rep2 GSE11200 Expression data from malting barley seeds
5.9 97.9 GSM282033 Malting_day4_Harrington_rep4 GSE11200 Expression data from malting barley seeds
4.7 96.9 GSM238412 Endosperm 4DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
4.6 96.8 GSM238411 Pericarp 8DAF; seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
4.3 96.4 GSM372955 genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.7 95.5 GSM282032 Malting_day1_Morex_rep1 GSE11200 Expression data from malting barley seeds
3.6 95.3 GSM238431 Embryo 25DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains

Inter-species module comparison

A co-expression module including the rice gene, Os03g0800500, orthologous to the query gene, Contig17106_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.80 94.6 Os03g0800500 At1g26890 - - 2e-1 At1g78410 VQ motif-containing protein O.I. H.G. S.X.
0.33 38.8 Os02g0816100 At1g26890 - HAD-superfamily hydrolase, subfamily IA, variant 1protein 2e+0 At4g26240 unknown protein O.I. H.G. S.X.
0.33 38.8 Os05g0150800 At1g26890 - C-1-tetrahydrofolate synthase, cytoplasmic (C1-THFsynthase) [Includes: Methylenetetrahydrofolatedehydrogenase (EC 1.5.1.5) 3e-18 At3g12290 tetrahydrofolate dehydrogenase/cyclohydrolase, putative O.I. H.G. S.X.
0.20 16.5 Os08g0557400 At1g26890 - Protein tyrosine phosphatase-like protein 9e-3 At3g44620 protein tyrosine phosphatase O.I. H.G. S.X.
0.18 13.7 Os04g0303900 At1g26890 - Endothelial monocyte-activating polypeptide IIprecursor pro-EMAP II family protein 2e+0 At3g62020 GLP10 (GERMIN-LIKE PROTEIN 10) O.I. H.G. S.X.
0.14 9.3 Os05g0200100 At1g26890 - Thioredoxin-related domain containing protein 3e-30 At4g29670 thioredoxin family protein O.I. H.G. S.X.
0.11 6.5 Os01g0693900 At1g26890 - Peptidyl-tRNA hydrolase family protein 1e-8 At1g18440 peptidyl-tRNA hydrolase family protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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