Co-expression analysis

Gene ID Contig17047_at
Gene name
Homology with ArabidopsisSimilar to At3g13440: methyltransferase/ nucleic acid binding (HF=2e+0)
Module size 8 genes
NF 0.41
%ile 56.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4153.90.90Contig17047_atContig17047--2e+0At3g13440methyltransferase/ nucleic acid bindingO.I.H.G.S.X.
0.5369.70.92Contig13179_atContig13179--8e-6At1g03750SWI2 (SWITCH 2)O.I.H.G.S.X.
0.4661.00.92Contig9479_s_atContig9479--2e+0At5g58470TAF15b (TBP-ASSOCIATED FACTOR 15b)O.I.H.G.S.X.
0.4458.90.92Contig9088_atContig9088--1e+0At5g46190KH domain-containing proteinO.I.H.G.S.X.
0.4356.40.91Contig1615_s_atContig1615--2e-103At5g42020BIP2O.I.H.G.S.X.
0.4356.40.92Contig7388_atContig7388--6e-5At3g47960proton-dependent oligopeptide transport (POT) family proteinO.I.H.G.S.X.
0.3138.60.92basd0c03_s_atbasd0c03--3e+0At3g16770ATEBP (ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN)O.I.H.G.S.X.
0.2326.10.92Contig15227_s_atContig15227--6e-1At1g77350unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.695.3GSM282026Malting_day1_Legacy_rep4GSE11200Expression data from malting barley seedsLink to GEO
3.294.3GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.993.4GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
2.893.1GSM238429Embryo 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.491.4GSM282037Malting_day1_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
2.290.3GSM282032Malting_day1_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO
2.290.3GSM261070Albina f-17 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
2.290.3GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
2.290.3GSM398270HS41-1_5d_rep1GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
2.189.7GSM146377Maythorpe shoot Control, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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