Co-expression analysis

Gene ID	Contig17047_at
Gene name
Homology with Arabidopsis	Similar to At3g13440: methyltransferase/ nucleic acid binding (HF=2e+0)
Module size	8 genes
NF	0.41
%ile	56.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.41	53.9	0.90	Contig17047_at	Contig17047	-	-	2e+0	At3g13440	methyltransferase/ nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.92	Contig13179_at	Contig13179	-	-	8e-6	At1g03750	SWI2 (SWITCH 2)	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.92	Contig9479_s_at	Contig9479	-	-	2e+0	At5g58470	TAF15b (TBP-ASSOCIATED FACTOR 15b)	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.92	Contig9088_at	Contig9088	-	-	1e+0	At5g46190	KH domain-containing protein	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.91	Contig1615_s_at	Contig1615	-	-	2e-103	At5g42020	BIP2	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.92	Contig7388_at	Contig7388	-	-	6e-5	At3g47960	proton-dependent oligopeptide transport (POT) family protein	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.92	basd0c03_s_at	basd0c03	-	-	3e+0	At3g16770	ATEBP (ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN)	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.92	Contig15227_s_at	Contig15227	-	-	6e-1	At1g77350	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.6	95.3	GSM282026	Malting_day1_Legacy_rep4	GSE11200	Expression data from malting barley seeds
3.2	94.3	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.9	93.4	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
2.8	93.1	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.4	91.4	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
2.2	90.3	GSM282032	Malting_day1_Morex_rep1	GSE11200	Expression data from malting barley seeds
2.2	90.3	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.2	90.3	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
2.2	90.3	GSM398270	HS41-1_5d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
2.1	89.7	GSM146377	Maythorpe shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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