Co-expression analysis

Gene ID	Contig17040_at
Gene name
Homology with Arabidopsis	Similar to At3g60490: AP2 domain-containing transcription factor TINY, putative (HF=2e-2)
Module size	6 genes
NF	0.67
%ile	88.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.96	Contig17040_at	Contig17040	-	-	2e-2	At3g60490	AP2 domain-containing transcription factor TINY, putative	O.I.	H.G.	S.X.	Please select
0.80	92.5	0.96	Contig15086_at	Contig15086	-	-	6e-4	At5g40570	surfeit locus protein 2 family protein / SURF2 family protein	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.95	Contig1924_at	Contig1924	-	-	3e-1	At4g25020	KOW domain-containing protein / D111/G-patch domain-containing protein	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.95	Contig15087_at	Contig15087	-	-	8e-3	At5g14390	-	O.I.	H.G.	S.X.	Please select
0.63	80.3	0.95	Contig15990_at	Contig15990	-	-	7e+0	At2g14910	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.92	HVSMEm0013G04r2_x_at	HVSMEm0013G04r2	-	-	5e+0	At1g59950	aldo/keto reductase, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
47.9	99.9	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
14.0	99.5	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
9.5	99.0	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
4.9	97.1	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.9	97.1	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.8	97.0	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
4.2	96.3	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.0	96.0	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
4.0	96.0	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.9	95.8	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds

Inter-species module comparison

A co-expression module including the grape gene, 1621348_at, orthologous to the query gene, Contig17040_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	83.2	1621348_at	At3g60490	-	-	3e-1	At2g36070	ATTIM44-2	O.I.	H.G.	S.X.	Please select
0.50	72.7	1609018_at	At3g60490	-	-	1e+0	At3g44580	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	66.5	1621992_s_at	At3g60490	hypothetical protein LOC100259183	-	2e-11	At5g66290	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	61.5	1621770_at	At3g60490	-	-	1e+0	At1g10030	ERG28 (Arabidopsis homolog of yeast ergosterol28)	O.I.	H.G.	S.X.	Please select
0.35	48.5	1607612_at	At3g60490	hypothetical protein LOC100262044	-	2e-12	At4g31300	PBA1	O.I.	H.G.	S.X.	Please select
0.33	45.7	1611129_s_at	At3g60490	hypothetical protein LOC100261235	-	2e+0	At2g06200	AtGRF6 (GROWTH-REGULATING FACTOR 6)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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