CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig17040_at

Gene name
Homology with Arabidopsis Similar to At3g60490: AP2 domain-containing transcription factor TINY, putative (HF=2e-2)

Module size 6 genes

NF 0.67

%ile 88.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.1 0.96 Contig17040_at Contig17040 - - 2e-2 At3g60490 AP2 domain-containing transcription factor TINY, putative O.I. H.G. S.X.
0.80 92.5 0.96 Contig15086_at Contig15086 - - 6e-4 At5g40570 surfeit locus protein 2 family protein / SURF2 family protein O.I. H.G. S.X.
0.73 88.7 0.95 Contig1924_at Contig1924 - - 3e-1 At4g25020 KOW domain-containing protein / D111/G-patch domain-containing protein O.I. H.G. S.X.
0.73 88.7 0.95 Contig15087_at Contig15087 - - 8e-3 At5g14390 - O.I. H.G. S.X.
0.63 80.3 0.95 Contig15990_at Contig15990 - - 7e+0 At2g14910 unknown protein O.I. H.G. S.X.
0.36 47.1 0.92 HVSMEm0013G04r2_x_at HVSMEm0013G04r2 - - 5e+0 At1g59950 aldo/keto reductase, putative O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
47.9 99.9 GSM238415 Endosperm 8DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
14.0 99.5 GSM238414 Endosperm 8DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
9.5 99.0 GSM282038 Malting_kilned_Morex_rep1 GSE11200 Expression data from malting barley seeds
4.9 97.1 GSM261047 after 3 days in mannitol medium rep3 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.9 97.1 GSM261073 Albina f-17 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.8 97.0 GSM215729 gibberellin plus Yariv-reagent treatment rep1 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
4.2 96.3 GSM261045 after 3 days in mannitol medium rep1 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.0 96.0 GSM215732 gibberellin plus Yariv-reagent treatment rep2 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
4.0 96.0 GSM261070 Albina f-17 Control rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.9 95.8 GSM282031 Malting_day1_Harrington_rep1 GSE11200 Expression data from malting barley seeds

Inter-species module comparison

A co-expression module including the rice gene, Os01g0293600, orthologous to the query gene, Contig17040_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 68.0 Os01g0293600 At3g60490 - HAT dimerisation domain containing protein 1e+0 At4g09660 - O.I. H.G. S.X.
0.71 89.6 Os05g0234700 At3g60490 - HAT dimerisation domain containing protein 6e-2 At4g09660 - O.I. H.G. S.X.
0.63 82.7 Os05g0204700 At3g60490 - - 6e-1 At3g49120 PRXCB (PEROXIDASE CB) O.I. H.G. S.X.
0.61 81.2 Os11g0427300 At3g60490 - - 2e+0 At1g33840 unknown protein O.I. H.G. S.X.
0.38 46.9 Os12g0153700 At3g60490 - - 2e+0 At5g44540 tapetum-specific protein-related O.I. H.G. S.X.
0.35 41.7 Os10g0468050 At3g60490 - - 9e+0 At5g04820 OFP13 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13) O.I. H.G. S.X.
0.31 34.5 Os09g0429000 At3g60490 - - 6e+0 At5g43520 DC1 domain-containing protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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