Co-expression analysis

Gene ID	Contig17036_at
Gene name
Homology with Arabidopsis	Similar to At3g27720: zinc finger protein-related (HF=4e-7)
Module size	7 genes
NF	0.47
%ile	65.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.56	74.3	0.95	Contig17036_at	Contig17036	-	-	4e-7	At3g27720	zinc finger protein-related	O.I.	H.G.	S.X.	Please select
0.71	87.1	0.96	Contig7886_at	Contig7886	-	-	8e+0	At5g39790	5'-AMP-activated protein kinase beta-1 subunit-related	O.I.	H.G.	S.X.	Please select
0.56	74.3	0.95	Contig5960_at	Contig5960	-	-	1e-16	At3g18880	ribosomal protein S17 family protein	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.96	Contig8742_at	Contig8742	-	-	1e-6	At3g61600	ATPOB1	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.97	Contig6981_at	Contig6981	-	-	4e-5	At4g00170	vesicle-associated membrane family protein / VAMP family protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.96	Contig1445_at	Contig1445	-	-	5e-3	At3g49390	CID10	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.96	Contig10592_at	Contig10592	-	-	1e-2	At5g26180	NOL1/NOP2/sun family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.0	96.0	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.4	94.8	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.0	93.8	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.0	93.8	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.8	93.1	GSM146375	Maythorpe shoot Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
2.7	92.7	GSM160822	38% SWC rep3	GSE6990	Barley drought stress
2.7	92.7	GSM261024	ABA-Early-rep1	GSE10328	ABA experiment
2.6	92.3	GSM161148	7% SWC rep3	GSE6990	Barley drought stress

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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