Co-expression analysis

Gene ID	Contig16955_at
Gene name
Homology with Arabidopsis	Similar to At5g06160: ATO (ATROPOS) (HF=1e-1)
Module size	6 genes
NF	0.03
%ile	3.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.46	61.0	0.90	Contig16955_at	Contig16955	-	-	1e-1	At5g06160	ATO (ATROPOS)	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.89	Contig14217_at	Contig14217	-	-	1e+0	At1g77480	nucellin protein, putative	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.91	Contig1557_at	Contig1557	-	-	3e-23	At3g60245	60S ribosomal protein L37a (RPL37aC)	O.I.	H.G.	S.X.	Please select
0.09	7.4	0.91	Contig6213_x_at	Contig6213	-	-	8e-4	At1g05850	POM1 (POM-POM1)	O.I.	H.G.	S.X.	Please select
0.03	2.6	0.90	Contig14457_s_at	Contig14457	-	-	6e-3	At2g44525	unknown protein	O.I.	H.G.	S.X.	Please select
0.01	1.1	0.89	Contig15375_at	Contig15375	-	-	2e+0	At5g49410	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.5	97.6	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.5	97.6	GSM419976	Palea_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
5.5	97.6	GSM440964	Control palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
5.4	97.5	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.3	96.4	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.9	95.8	GSM419974	Lemma_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
3.9	95.8	GSM440959	Control lemma_Rep3	GSE17669	Gene expression in the barley spike during drought stress
3.3	94.6	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.2	94.3	GSM419977	Palea_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
3.2	94.3	GSM440965	Control palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress

Inter-species module comparison

A co-expression module including the grape gene, 1606651_at, orthologous to the query gene, Contig16955_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	1606651_at	At5g06160	-	-	4e+0	At3g15280	unknown protein	O.I.	H.G.	S.X.	Please select
0.09	9.4	1614203_at	At5g06160	hypothetical protein LOC100266138	-	2e-6	At1g19860	zinc finger (CCCH-type) family protein	O.I.	H.G.	S.X.	Please select
0.04	5.2	1619963_a_at	At5g06160	hypothetical protein LOC100261868	-	1e-19	At4g21560	VPS28-1 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 28 HOMOLOG 1)	O.I.	H.G.	S.X.	Please select
0.03	4.2	1608703_at	At5g06160	ubiquitin-activating enzyme	-	1e-24	At5g06460	ATUBA2	O.I.	H.G.	S.X.	Please select
0.02	3.2	1620076_s_at	At5g06160	hypothetical protein LOC100254960	-	6e-15	At1g15270	-	O.I.	H.G.	S.X.	Please select
0.01	2.1	1616468_at	At5g06160	hypothetical protein LOC100246828	-	5e-66	At1g63830	proline-rich family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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