Co-expression analysis

Gene ID	Contig16955_at
Gene name
Homology with Arabidopsis	Similar to At5g06160: ATO (ATROPOS) (HF=1e-1)
Module size	6 genes
NF	0.03
%ile	3.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.46	61.0	0.90	Contig16955_at	Contig16955	-	-	1e-1	At5g06160	ATO (ATROPOS)	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.89	Contig14217_at	Contig14217	-	-	1e+0	At1g77480	nucellin protein, putative	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.91	Contig1557_at	Contig1557	-	-	3e-23	At3g60245	60S ribosomal protein L37a (RPL37aC)	O.I.	H.G.	S.X.	Please select
0.09	7.4	0.91	Contig6213_x_at	Contig6213	-	-	8e-4	At1g05850	POM1 (POM-POM1)	O.I.	H.G.	S.X.	Please select
0.03	2.6	0.90	Contig14457_s_at	Contig14457	-	-	6e-3	At2g44525	unknown protein	O.I.	H.G.	S.X.	Please select
0.01	1.1	0.89	Contig15375_at	Contig15375	-	-	2e+0	At5g49410	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.5	97.6	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.5	97.6	GSM419976	Palea_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
5.5	97.6	GSM440964	Control palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
5.4	97.5	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.3	96.4	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.9	95.8	GSM419974	Lemma_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
3.9	95.8	GSM440959	Control lemma_Rep3	GSE17669	Gene expression in the barley spike during drought stress
3.3	94.6	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.2	94.3	GSM419977	Palea_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
3.2	94.3	GSM440965	Control palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress

Inter-species module comparison

A co-expression module including the soybean gene, HgAffx.16892.1.S1_at, orthologous to the query gene, Contig16955_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	HgAffx.16892.1.S1_at	At5g06160	-	-	8e-1	At5g06300	carboxy-lyase	O.I.	H.G.	S.X.	Please select
0.80	91.5	PsAffx.C158000022_at	At5g06160	-	-	7e+0	At2g09388	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	86.1	GmaAffx.1301.81.S1_at	At5g06160	differentially expressed in soybean	-	5e+0	At4g22370	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	80.7	PsAffx.C86000041_at	At5g06160	-	-	2e-1	At1g31330	PSAF (photosystem I subunit F)	O.I.	H.G.	S.X.	Please select
0.50	71.7	PsAffx.psZG005xN22f_s_at	At5g06160	-	-	9e+0	At5g14602	unknown protein	O.I.	H.G.	S.X.	Please select
0.10	13.0	GmaAffx.89500.1.A1_at	At5g06160	-	-	1e+1	At5g48860	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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