Co-expression analysis

Gene ID	Contig16886_at
Gene name
Homology with Arabidopsis	Similar to At5g60460: sec61beta family protein (HF=5e+0)
Module size	8 genes
NF	0.58
%ile	80.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.48	63.2	0.96	Contig16886_at	Contig16886	-	-	5e+0	At5g60460	sec61beta family protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.97	Contig11673_at	Contig11673	-	-	7e-8	At2g35720	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.97	Contig26395_at	Contig26395	-	-	5e+0	At5g07460	PMSR2 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 2)	O.I.	H.G.	S.X.	Please select
0.63	80.3	0.96	Contig16455_at	Contig16455	-	-	1e-1	At3g46880	unknown protein	O.I.	H.G.	S.X.	Please select
0.63	80.3	0.97	Contig841_x_at	Contig841	-	-	1e-35	At2g34420	LHB1B2	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.97	Contig11731_at	Contig11731	-	-	2e-10	At3g02450	cell division protein ftsH, putative	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.97	Contig18744_at	Contig18744	-	-	2e+0	At5g41630	F-box family protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.97	Contig15463_at	Contig15463	-	-	5e+0	At5g11930	glutaredoxin family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.6	98.8	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
7.1	98.4	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
5.3	97.4	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.6	96.8	GSM398276	Moroc9-75_1d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.5	96.7	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.8	95.7	GSM282023	Malting_day4_Merit_rep3	GSE11200	Expression data from malting barley seeds
3.7	95.5	GSM282024	Malting_day4_Merit_rep2	GSE11200	Expression data from malting barley seeds
3.6	95.3	GSM282022	Malting_day4_Merit_rep4	GSE11200	Expression data from malting barley seeds
3.5	95.1	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.5	95.1	GSM282028	Malting_day1_Merit_rep1	GSE11200	Expression data from malting barley seeds

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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