CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig16875_at

Gene name vacuolar Na+/H+ antiporter
Homology with Arabidopsis Similar to At5g27150: NHX1 (NA+/H+ EXCHANGER) (HF=3e-15)

Module size 7 genes

NF 0.67

%ile 88.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.86 94.8 0.90 Contig16875_at Contig16875 vacuolar Na+/H+ antiporter - 3e-15 At5g27150 NHX1 (NA+/H+ EXCHANGER) O.I. H.G. S.X.
0.73 88.7 0.93 HX03C24u_at HX03C24u - - 1e-2 At5g47500 pectinesterase family protein O.I. H.G. S.X.
0.71 87.1 0.92 Contig9625_at Contig9625 - - 1e-14 At2g45440 DHDPS2 (DIHYDRODIPICOLINATE SYNTHASE) O.I. H.G. S.X.
0.63 80.3 0.92 HY08C12u_at HY08C12u - - 3e+0 At5g23640 unknown protein O.I. H.G. S.X.
0.56 74.3 0.92 Contig18868_at Contig18868 - - 6e-1 At4g01023 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.50 66.9 0.93 Contig21697_at Contig21697 - - 1e+0 At4g35980 unknown protein O.I. H.G. S.X.
0.46 61.0 0.94 Contig20310_at Contig20310 - - 3e+0 At5g56370 F-box family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.9 98.7 GSM71147 OWB-D unstress replicate 3 GSE3170 Barley single feature polymorphisms and drought stress gene expression
7.8 98.6 GSM71145 OWB-D unstress replicate 1 GSE3170 Barley single feature polymorphisms and drought stress gene expression
7.6 98.6 GSM282031 Malting_day1_Harrington_rep1 GSE11200 Expression data from malting barley seeds
7.4 98.5 GSM282033 Malting_day4_Harrington_rep4 GSE11200 Expression data from malting barley seeds
6.4 98.1 GSM71146 OWB-D unstress replicate 2 GSE3170 Barley single feature polymorphisms and drought stress gene expression
5.5 97.6 GSM71139 OWB-D stress replicate 1 GSE3170 Barley single feature polymorphisms and drought stress gene expression
4.8 97.0 GSM71140 OWB-D stress replicate 2 GSE3170 Barley single feature polymorphisms and drought stress gene expression
4.3 96.4 GSM238408 Pericarp 4DAF; seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
4.3 96.4 GSM71141 OWB-D stress replicate 3 GSE3170 Barley single feature polymorphisms and drought stress gene expression
3.8 95.7 GSM238418 Endosperm 25DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains

Inter-species module comparison

A co-expression module including the rice gene, Os05g0148600, orthologous to the query gene, Contig16875_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.92 99.1 Os05g0148600 At5g27150 - Na/H antiporter 2e-14 At3g05030 NHX2 (SODIUM HYDROGEN EXCHANGER 2) O.I. H.G. S.X.
0.32 36.3 Os03g0307100 At5g27150 - TolB, C-terminal domain containing protein 7e-37 At2g47390 serine-type endopeptidase/ serine-type peptidase O.I. H.G. S.X.
0.29 31.1 Os01g0574500 At5g27150 - Peptidase M41 domain containing protein 4e-78 At2g26140 ftsh4 (FtsH protease 4) O.I. H.G. S.X.
0.23 21.2 Os04g0525900 At5g27150 - Major facilitator superfamily protein 1e-18 At5g64500 membrane protein-related O.I. H.G. S.X.
0.21 17.9 Os06g0301000 At5g27150 - Zn-finger, RING domain containing protein 4e-3 At1g65040 protein binding / zinc ion binding O.I. H.G. S.X.
0.19 15.1 Os09g0123300 At5g27150 - Protein kinase domain containing protein 3e-1 At5g49770 leucine-rich repeat transmembrane protein kinase, putative O.I. H.G. S.X.
0.17 12.6 Os02g0794700 At5g27150 - Neutral leucine aminopeptidase preproteinprecursor (EC 3.4.11.1) 2e-33 At2g24200 cytosol aminopeptidase O.I. H.G. S.X.
0.14 9.3 Os02g0562300 At5g27150 - Conserved hypothetical protein 1e-12 At2g18750 calmodulin-binding protein O.I. H.G. S.X.
0.14 9.3 Os06g0188000 At5g27150 - Cyclic nucleotide-gated channel C (Fragment) 1e-11 At4g30360 ATCNGC17 O.I. H.G. S.X.
0.11 6.5 Os07g0476500 At5g27150 - Peptidyl-prolyl cis-trans isomerase, cyclophilintype domain containing protein 1e-5 At3g66654 peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein O.I. H.G. S.X.
0.10 5.7 Os02g0106800 At5g27150 - Conserved hypothetical protein 3e-6 At4g10430 - O.I. H.G. S.X.
0.08 4.2 Os01g0886300 At5g27150 - - 1e-6 At4g26480 KH domain-containing protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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