Co-expression analysis

Gene ID	Contig16875_at
Gene name	vacuolar Na+/H+ antiporter
Homology with Arabidopsis	Similar to At5g27150: NHX1 (NA+/H+ EXCHANGER) (HF=3e-15)
Module size	7 genes
NF	0.67
%ile	88.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.86	94.8	0.90	Contig16875_at	Contig16875	vacuolar Na+/H+ antiporter	-	3e-15	At5g27150	NHX1 (NA+/H+ EXCHANGER)	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.93	HX03C24u_at	HX03C24u	-	-	1e-2	At5g47500	pectinesterase family protein	O.I.	H.G.	S.X.	Please select
0.71	87.1	0.92	Contig9625_at	Contig9625	-	-	1e-14	At2g45440	DHDPS2 (DIHYDRODIPICOLINATE SYNTHASE)	O.I.	H.G.	S.X.	Please select
0.63	80.3	0.92	HY08C12u_at	HY08C12u	-	-	3e+0	At5g23640	unknown protein	O.I.	H.G.	S.X.	Please select
0.56	74.3	0.92	Contig18868_at	Contig18868	-	-	6e-1	At4g01023	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.93	Contig21697_at	Contig21697	-	-	1e+0	At4g35980	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.94	Contig20310_at	Contig20310	-	-	3e+0	At5g56370	F-box family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.9	98.7	GSM71147	OWB-D unstress replicate 3	GSE3170	Barley single feature polymorphisms and drought stress gene expression
7.8	98.6	GSM71145	OWB-D unstress replicate 1	GSE3170	Barley single feature polymorphisms and drought stress gene expression
7.6	98.6	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
7.4	98.5	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
6.4	98.1	GSM71146	OWB-D unstress replicate 2	GSE3170	Barley single feature polymorphisms and drought stress gene expression
5.5	97.6	GSM71139	OWB-D stress replicate 1	GSE3170	Barley single feature polymorphisms and drought stress gene expression
4.8	97.0	GSM71140	OWB-D stress replicate 2	GSE3170	Barley single feature polymorphisms and drought stress gene expression
4.3	96.4	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.3	96.4	GSM71141	OWB-D stress replicate 3	GSE3170	Barley single feature polymorphisms and drought stress gene expression
3.8	95.7	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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