Co-expression analysis

Gene ID Contig16738_at
Gene name
Homology with ArabidopsisSimilar to At1g20510: OPCL1 (OPC-8:0 COA LIGASE1) (HF=2e-3)
Module size 10 genes
NF 0.42
%ile 58.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5369.70.85Contig16738_atContig16738--2e-3At1g20510OPCL1 (OPC-8:0 COA LIGASE1)O.I.H.G.S.X.
0.4863.20.87HVSMEf0020J20f2_x_atHVSMEf0020J20f2--2e+0At4g13540unknown proteinO.I.H.G.S.X.
0.4458.90.90Contig6781_atContig6781--7e+0At5g20650COPT5O.I.H.G.S.X.
0.4153.90.88Contig12160_atContig12160--2e-7At3g52590UBQ1 (UBIQUITIN EXTENSION PROTEIN 1)O.I.H.G.S.X.
0.4153.90.91HV_CEb0015K08r2_atHV_CEb0015K08r2--5e+0At3g48840nucleic acid binding / nucleotide bindingO.I.H.G.S.X.
0.3950.50.90Contig7790_atContig7790--3e-11At2g34160nucleic acid bindingO.I.H.G.S.X.
0.3849.50.90Contig12191_s_atContig12191--7e-5At5g58390peroxidase, putativeO.I.H.G.S.X.
0.3342.60.93Contig5708_atContig5708--1e+0At2g47280pectinesteraseO.I.H.G.S.X.
0.3138.60.92Contig16692_atContig16692--6e-19At1g14610TWN2 (TWIN 2)O.I.H.G.S.X.
0.2528.90.93Contig3967_s_atContig3967--6e-16At5g47040LON2 (LON PROTEASE 2)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.394.6GSM382236Root_Control2GSE15295Mercury toxicity in barley rootsLink to GEO
2.993.4GSM146359Golden Promise Root Control, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
2.993.4GSM16081938% SWC rep1GSE6990Barley drought stressLink to GEO
2.893.1GSM382235Root_Control1GSE15295Mercury toxicity in barley rootsLink to GEO
2.792.7GSM146357Golden Promise Root Control, biological rep1GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
2.792.7GSM261021ABA-Control-rep1GSE10328ABA experimentLink to GEO
2.792.7GSM146364Maythorpe Root Control, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
2.792.7GSM146361Golden Promise Root Salt, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
2.792.7GSM146358Golden Promise Root Control, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
2.792.7GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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