Co-expression analysis

Gene ID Contig16651_at
Gene name
Homology with ArabidopsisSimilar to At5g01220: SQD2 (sulfoquinovosyldiacylglycerol 2) (HF=3e+0)
Module size 6 genes
NF 0.27
%ile 34.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5674.30.89Contig16651_atContig16651--3e+0At5g01220SQD2 (sulfoquinovosyldiacylglycerol 2)O.I.H.G.S.X.
0.5674.30.88Contig20244_atContig20244--2e-4At4g37200HCF164O.I.H.G.S.X.
0.5066.90.92Contig5032_atContig5032--4e-1At4g38210ATEXPA20 (ARABIDOPSIS THALIANA EXPANSIN A20)O.I.H.G.S.X.
0.4458.90.92Contig7157_atContig7157--2e-11At2g24500FZFO.I.H.G.S.X.
0.2224.20.88Contig6338_atContig6338--3e-1At5g10890myosin heavy chain-relatedO.I.H.G.S.X.
0.064.80.91Contig4769_atContig4769--3e-5At2g32520dienelactone hydrolase family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
24.499.8GSM281749Genotype: Morex - rep2GSE11182Steptoe x Morex seedling leaf comparisonLink to GEO
24.299.8GSM281748Genotype: Morex - rep1GSE11182Steptoe x Morex seedling leaf comparisonLink to GEO
12.899.4GSM281750Genotype: Morex - rep3GSE11182Steptoe x Morex seedling leaf comparisonLink to GEO
9.599.0GSM419976Palea_Rep2GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
9.599.0GSM440964Control palea_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO
4.296.3GSM419977Palea_Rep3GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
4.296.3GSM440965Control palea_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
3.093.8GSM71144OWB-R stress replicate 3GSE3170 Barley single feature polymorphisms and drought stress gene expressionLink to GEO
2.993.4GSM419975Palea_Rep1GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
2.993.4GSM440963Control palea_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO

Inter-species module comparison

A co-expression module including the maize gene, Zm.4612.1.A1_at, orthologous to the query gene, Contig16651_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9199.0Zm.4612.1.A1_atAt5g01220--5e+0At5g01220SQD2 (sulfoquinovosyldiacylglycerol 2)O.I.H.G.S.X.
0.6077.8Zm.13557.1.A1_atAt5g01220hypothetical protein LOC100274131-2e-15At5g51230EMF2 (EMBRYONIC FLOWER 2)O.I.H.G.S.X.
0.5674.4Zm.7150.2.A1_x_atAt5g01220hypothetical protein LOC100279278-9e-8At5g15470GAUT14 (Galacturonosyltransferase 14)O.I.H.G.S.X.
0.5065.7Zm.543.1.S1_atAt5g01220glutathione transferase13-2e+0At1g72210basic helix-loop-helix (bHLH) family protein (bHLH096)O.I.H.G.S.X.
0.5065.7Zm.17182.1.A1_atAt5g01220hypothetical protein LOC100193827-3e-12At5g08590SNRK2.1 (SNF1-RELATED PROTEIN KINASE 2.1)O.I.H.G.S.X.
0.4455.7Zm.3353.1.A1_atAt5g01220toc64-4e-1At3g09120unknown proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



Back to the CoP portal site

Back to the KAGIANA project homepage