Co-expression analysis

Gene ID	Contig16651_at
Gene name
Homology with Arabidopsis	Similar to At5g01220: SQD2 (sulfoquinovosyldiacylglycerol 2) (HF=3e+0)
Module size	6 genes
NF	0.27
%ile	34.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.56	74.3	0.89	Contig16651_at	Contig16651	-	-	3e+0	At5g01220	SQD2 (sulfoquinovosyldiacylglycerol 2)	O.I.	H.G.	S.X.	Please select
0.56	74.3	0.88	Contig20244_at	Contig20244	-	-	2e-4	At4g37200	HCF164	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.92	Contig5032_at	Contig5032	-	-	4e-1	At4g38210	ATEXPA20 (ARABIDOPSIS THALIANA EXPANSIN A20)	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.92	Contig7157_at	Contig7157	-	-	2e-11	At2g24500	FZF	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.88	Contig6338_at	Contig6338	-	-	3e-1	At5g10890	myosin heavy chain-related	O.I.	H.G.	S.X.	Please select
0.06	4.8	0.91	Contig4769_at	Contig4769	-	-	3e-5	At2g32520	dienelactone hydrolase family protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
24.4	99.8	GSM281749	Genotype: Morex - rep2	GSE11182	Steptoe x Morex seedling leaf comparison
24.2	99.8	GSM281748	Genotype: Morex - rep1	GSE11182	Steptoe x Morex seedling leaf comparison
12.8	99.4	GSM281750	Genotype: Morex - rep3	GSE11182	Steptoe x Morex seedling leaf comparison
9.5	99.0	GSM419976	Palea_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
9.5	99.0	GSM440964	Control palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
4.2	96.3	GSM419977	Palea_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
4.2	96.3	GSM440965	Control palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
3.0	93.8	GSM71144	OWB-R stress replicate 3	GSE3170	Barley single feature polymorphisms and drought stress gene expression
2.9	93.4	GSM419975	Palea_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
2.9	93.4	GSM440963	Control palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress

Inter-species module comparison

A co-expression module including the wheat gene, Ta.24785.1.A1_at, orthologous to the query gene, Contig16651_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.56	78.6	Ta.24785.1.A1_at	At5g01220	-	-	5e+0	At3g48240	octicosapeptide/Phox/Bem1p (PB1) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.60	81.0	Ta.4360.2.S1_at	At5g01220	-	-	3e+0	At3g43722	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	46.9	TaAffx.66659.1.S1_at	At5g01220	-	-	8e-1	At5g05230	ubiquitin-protein ligase	O.I.	H.G.	S.X.	Please select
0.27	35.6	Ta.24400.1.S1_at	At5g01220	-	-	5e+0	At5g02600	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please select
0.07	8.6	TaAffx.110711.2.S1_s_at	At5g01220	-	-	2e+1	At5g07520	GRP18 (GLYCINE-RICH PROTEIN 18)	O.I.	H.G.	S.X.	Please select
0.03	4.7	Ta.23293.1.S1_x_at	At5g01220	-	-	1e-5	At4g03410	peroxisomal membrane protein-related	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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