Co-expression analysis

Gene ID Contig16651_at
Gene name
Homology with ArabidopsisSimilar to At5g01220: SQD2 (sulfoquinovosyldiacylglycerol 2) (HF=3e+0)
Module size 6 genes
NF 0.27
%ile 34.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5674.30.89Contig16651_atContig16651--3e+0At5g01220SQD2 (sulfoquinovosyldiacylglycerol 2)O.I.H.G.S.X.
0.5066.90.92Contig5032_atContig5032--4e-1At4g38210ATEXPA20 (ARABIDOPSIS THALIANA EXPANSIN A20)O.I.H.G.S.X.
0.2224.20.88Contig6338_atContig6338--3e-1At5g10890myosin heavy chain-relatedO.I.H.G.S.X. hydrolase family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
24.499.8GSM281749Genotype: Morex - rep2GSE11182Steptoe x Morex seedling leaf comparisonLink to GEO
24.299.8GSM281748Genotype: Morex - rep1GSE11182Steptoe x Morex seedling leaf comparisonLink to GEO
12.899.4GSM281750Genotype: Morex - rep3GSE11182Steptoe x Morex seedling leaf comparisonLink to GEO
9.599.0GSM419976Palea_Rep2GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
9.599.0GSM440964Control palea_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO
4.296.3GSM419977Palea_Rep3GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
4.296.3GSM440965Control palea_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
3.093.8GSM71144OWB-R stress replicate 3GSE3170 Barley single feature polymorphisms and drought stress gene expressionLink to GEO
2.993.4GSM419975Palea_Rep1GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
2.993.4GSM440963Control palea_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g01220, orthologous to the query gene, Contig16651_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
0.2830.3At5g01220831888SQD2 (sulfoquinovosyldiacylglycerol 2)involved in sulfolipid biosynthesisO.I.H.G.S.X.
0.5773.8At3g02040821175SRG3 (senescence-related gene 3)F:phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:unknown;BMOFPAVO.I.H.G.S.X.
0.4761.2At5g20790832202unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.4659.8At3g05630819730PLDP2Encodes a member of the PXPH-PLD subfamily of phospholipase D proteins. Regulates vesicle trafficking. Required for auxin transport and distribution and hence auxin responses. This subfamily is novel structurally different from the majority of plant PLDs by having phox homology (PX) and pleckstrin homology (PH) domains. Involved regulating root development in response to nutrient limitation. Plays a major role in phosphatidic acid production during phosphate deprivation. Induced upon Pi starvation in both shoots and roots. Involved in hydrolyzing phosphatidylcholine and phosphatidylethanolamine to produce diacylglycerol for digalactosyldiacylglycerol synthesis and free Pi to sustain other Pi-requiring processes. Does not appear to be involved in root hair patterning.O.I.H.G.S.X.
0.4457.2At5g20150832137SPX1 (SPX DOMAIN GENE 1)F:molecular_function unknown;P:cellular response to phosphate starvation, positive regulation of cellular response to phosphate starvation;C:nucleus;FMPOBAO.I.H.G.S.X.
0.4355.3At2g32830817844PHT5phosphate transporterO.I.H.G.S.X.
0.3948.4At2g04460814986transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3643.6At3g17790821047PAP17F:phosphatase activity, protein serine/threonine phosphatase activity, acid phosphatase activity;P:response to hydrogen peroxide, cellular phosphate ion homeostasis;C:cell surface;MOBPFAO.I.H.G.S.X.
0.3541.6At3g43110823370unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.

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