Co-expression analysis

Gene ID Contig1664_at
Gene name
Homology with ArabidopsisSimilar to At5g62000: ARF2 (AUXIN RESPONSE FACTOR 2) (HF=5e-25)
Module size 6 genes
NF 0.03
%ile 3.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.77Contig1664_atContig1664--5e-25At5g62000ARF2 (AUXIN RESPONSE FACTOR 2)O.I.H.G.S.X.
0.1412.90.93Contig16046_atContig16046--1e+0At5g10860CBS domain-containing proteinO.I.H.G.S.X.
0.064.80.91rbaal29b24_atrbaal29b24--1e-6At5g15790zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.021.80.90HX02B15u_s_atHX02B15u--5e-1At1g49520SWIB complex BAF60b domain-containing proteinO.I.H.G.S.X.
0.021.80.91Contig12571_atContig12571--3e+0At5g37520unknown proteinO.I.H.G.S.X.
0.011.10.86HVSMEm0009E18r2_atHVSMEm0009E18r2--7e-1At3g59670unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.599.3GSM238418Endosperm 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
11.099.2GSM261079Albina e-16 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
11.099.2GSM238414Endosperm 8DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
10.499.2GSM261067Xantha s-46 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
7.998.7GSM238415Endosperm 8DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
7.798.6GSM238416Endosperm 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
7.298.5GSM238417Endosperm 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.297.4GSM238419Endosperm 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.696.8GSM261061Xantha b-12 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
4.196.2GSM382236Root_Control2GSE15295Mercury toxicity in barley rootsLink to GEO

Inter-species module comparison

A co-expression module including the maize gene, Zm.4931.1.A1_at, orthologous to the query gene, Contig1664_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5976.1Zm.4931.1.A1_atAt5g62000hypothetical protein LOC100273501-3e-26At5g62000ARF2 (AUXIN RESPONSE FACTOR 2)O.I.H.G.S.X.
0.3538.9Zm.5851.8.A1_x_atAt5g62000MADS box protein-1e-7At4g18960AG (AGAMOUS)O.I.H.G.S.X.
0.3233.4Zm.5563.1.A1_atAt5g62000hypothetical protein LOC100272774-1e-2At4g35730unknown proteinO.I.H.G.S.X.
0.3029.8Zm.5048.7.A1_a_atAt5g62000hypothetical protein LOC100280264-3e-11At5g0709040S ribosomal protein S4 (RPS4B)O.I.H.G.S.X.
0.2928.1Zm.18268.1.A1_atAt5g62000hypothetical LOC542182-2e-8At5g45290zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.2521.3Zm.3398.1.A1_atAt5g62000ATGP4-5e-1At3g26980MUB4 (MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 4 PRECURSOR)O.I.H.G.S.X.
0.2521.3Zm.3254.1.S1_atAt5g62000hypothetical protein LOC100274018-3e-3At3g14090ATEXO70D3 (exocyst subunit EXO70 family protein D3)O.I.H.G.S.X.
0.2521.3Zm.16811.1.S1_atAt5g62000hypothetical protein LOC100192683-2e-1At2g10920unknown proteinO.I.H.G.S.X.
0.2216.9Zm.14473.3.A1_atAt5g62000--3e-14At4g34110PAB2 (POLY(A) BINDING 2)O.I.H.G.S.X.
0.2216.9Zm.14907.1.A1_atAt5g62000hypothetical protein LOC100279699-2e+0At5g4770060S acidic ribosomal protein P1 (RPP1C)O.I.H.G.S.X.
0.2216.9Zm.14051.1.S1_atAt5g62000hypothetical protein LOC100217091-5e-1At5g38650proteasome maturation factor UMP1 family proteinO.I.H.G.S.X.
0.2115.5Zm.9587.1.A1_atAt5g62000--5e+0At5g54062unknown proteinO.I.H.G.S.X.
0.1811.6Zm.10422.1.S1_atAt5g62000hypothetical protein LOC100275624-4e+0At2g14846protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.H.G.S.X.
0.158.6Zm.6788.1.A1_atAt5g62000Zea floricaula/leafy1-5e+0At5g59160TOPP2O.I.H.G.S.X.
0.147.7Zm.2667.1.A1_atAt5g62000signal transducer-3e-2At3g44750HDA3 (HISTONE DEACETYLASE 3)O.I.H.G.S.X.
0.115.3Zm.9603.1.A1_atAt5g62000--1e+0At4g15715-O.I.H.G.S.X.
0.094.0Zm.5802.1.A1_atAt5g62000hypothetical protein LOC100193125-2e+0At4g31450zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.083.4Zm.17921.1.A1_atAt5g62000hypothetical protein LOC100273158-1e-8At1g20110zinc finger (FYVE type) family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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