Co-expression analysis

Gene ID Contig1664_at
Gene name
Homology with ArabidopsisSimilar to At5g62000: ARF2 (AUXIN RESPONSE FACTOR 2) (HF=5e-25)
Module size 6 genes
NF 0.03
%ile 3.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.77Contig1664_atContig1664--5e-25At5g62000ARF2 (AUXIN RESPONSE FACTOR 2)O.I.H.G.S.X.
0.1412.90.93Contig16046_atContig16046--1e+0At5g10860CBS domain-containing proteinO.I.H.G.S.X.
0.064.80.91rbaal29b24_atrbaal29b24--1e-6At5g15790zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.021.80.90HX02B15u_s_atHX02B15u--5e-1At1g49520SWIB complex BAF60b domain-containing proteinO.I.H.G.S.X.
0.021.80.91Contig12571_atContig12571--3e+0At5g37520unknown proteinO.I.H.G.S.X.
0.011.10.86HVSMEm0009E18r2_atHVSMEm0009E18r2--7e-1At3g59670unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.599.3GSM238418Endosperm 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
11.099.2GSM261079Albina e-16 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
11.099.2GSM238414Endosperm 8DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
10.499.2GSM261067Xantha s-46 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
7.998.7GSM238415Endosperm 8DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
7.798.6GSM238416Endosperm 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
7.298.5GSM238417Endosperm 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.297.4GSM238419Endosperm 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.696.8GSM261061Xantha b-12 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
4.196.2GSM382236Root_Control2GSE15295Mercury toxicity in barley rootsLink to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1611882_at, orthologous to the query gene, Contig1664_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5980.61611882_atAt5g62000hypothetical protein LOC100268072-7e-13At5g62000ARF2 (AUXIN RESPONSE FACTOR 2)O.I.H.G.S.X.
0.6787.91618094_atAt5g62000hypothetical protein LOC100261032-3e-27At4g33140unknown proteinO.I.H.G.S.X.
0.5375.21620327_atAt5g62000hypothetical protein LOC100259936-4e+0At2g30370allergen-relatedO.I.H.G.S.X.
0.4057.71620349_atAt5g62000hypothetical protein LOC100263124-8e-7At4g39860unknown proteinO.I.H.G.S.X.
0.4057.71611225_atAt5g62000--4e-10At4g22360SWIB complex BAF60b domain-containing proteinO.I.H.G.S.X.
0.3650.71612954_atAt5g62000hypothetical protein LOC100257012-4e-1At3g55070-O.I.H.G.S.X.
0.3548.51611673_atAt5g62000hypothetical protein LOC100267328-4e+0At5g06000EIF3G2O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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