CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig16630_at

Gene name
Homology with Arabidopsis Similar to At1g31250: proline-rich family protein (HF=1e+0)

Module size 6 genes

NF 0.31

%ile 40.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.44 58.9 0.96 Contig16630_at Contig16630 - - 1e+0 At1g31250 proline-rich family protein O.I. H.G. S.X.
0.38 49.5 0.96 Contig5510_s_at Contig5510 - - 1e-1 At5g04250 OTU-like cysteine protease family protein O.I. H.G. S.X.
0.38 49.5 0.96 Contig4647_at Contig4647 - - 3e-3 At2g37990 ribosome biogenesis regulatory protein (RRS1) family protein O.I. H.G. S.X.
0.36 47.1 0.96 Contig13674_at Contig13674 - - 2e+0 At5g17073 unknown protein O.I. H.G. S.X.
0.20 21.1 0.96 HA31E10r_s_at HA31E10r - - 1e+0 At4g15620 integral membrane family protein O.I. H.G. S.X.
0.17 16.9 0.96 Contig12816_at Contig12816 - - 1e-4 At4g08455 BTB/POZ domain-containing protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.0 97.2 GSM261070 Albina f-17 Control rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.8 97.0 GSM261079 Albina e-16 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.8 97.0 GSM372999 genotype: 11542 - pathogen isolates: K1 - time: 16 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.2 96.3 GSM261071 Albina f-17 Hardened rep1 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.2 96.3 GSM238412 Endosperm 4DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
4.1 96.2 GSM261073 Albina f-17 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.7 95.5 GSM372963 genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.5 95.1 GSM261069 Albina f-17 Control rep2 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.4 94.8 GSM261072 Albina f-17 Hardened rep2 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.3 94.6 GSM261068 Albina f-17 Control rep1 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Inter-species module comparison

A co-expression module including the maize gene, Zm.2831.1.A1_at, orthologous to the query gene, Contig16630_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.63 81.1 Zm.2831.1.A1_at At1g31250 - - 2e+0 At3g60760 unknown protein O.I. H.G. S.X.
0.71 88.2 Zm.5050.1.S1_at At1g31250 ATP sulfurylase - 1e-21 At3g22890 APS1 (ATP SULFURYLASE 1) O.I. H.G. S.X.
0.59 76.1 Zm.10308.1.A1_at At1g31250 - - 2e-1 At1g79880 La domain-containing protein O.I. H.G. S.X.
0.46 58.4 Zm.15522.1.A1_at At1g31250 - - 7e+0 At3g26934 unknown protein O.I. H.G. S.X.
0.44 55.7 Zm.12820.1.A1_at At1g31250 hypothetical protein LOC100275831 - 1e-1 At4g01430 nodulin MtN21 family protein O.I. H.G. S.X.
0.44 55.7 Zm.3815.2.S1_x_at At1g31250 - - 2e+0 At4g26800 pentatricopeptide (PPR) repeat-containing protein O.I. H.G. S.X.
0.33 36.0 Zm.8504.1.A1_at At1g31250 - - 2e-12 At1g01940 peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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