Co-expression analysis

Gene ID	Contig16630_at
Gene name
Homology with Arabidopsis	Similar to At1g31250: proline-rich family protein (HF=1e+0)
Module size	6 genes
NF	0.31
%ile	40.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.44	58.9	0.96	Contig16630_at	Contig16630	-	-	1e+0	At1g31250	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.96	Contig5510_s_at	Contig5510	-	-	1e-1	At5g04250	OTU-like cysteine protease family protein	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.96	Contig4647_at	Contig4647	-	-	3e-3	At2g37990	ribosome biogenesis regulatory protein (RRS1) family protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.96	Contig13674_at	Contig13674	-	-	2e+0	At5g17073	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.96	HA31E10r_s_at	HA31E10r	-	-	1e+0	At4g15620	integral membrane family protein	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.96	Contig12816_at	Contig12816	-	-	1e-4	At4g08455	BTB/POZ domain-containing protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.0	97.2	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.8	97.0	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.8	97.0	GSM372999	genotype: 11542 - pathogen isolates: K1 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.2	96.3	GSM261071	Albina f-17 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.2	96.3	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.1	96.2	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.7	95.5	GSM372963	genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.5	95.1	GSM261069	Albina f-17 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.4	94.8	GSM261072	Albina f-17 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.3	94.6	GSM261068	Albina f-17 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Inter-species module comparison

A co-expression module including the wheat gene, Ta.5437.3.S1_a_at, orthologous to the query gene, Contig16630_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	Ta.5437.3.S1_a_at	At1g31250	-	-	8e-1	At1g37140	MCT1 (mei2 C-Terminal RRM only like 1)	O.I.	H.G.	S.X.	Please select
0.73	89.1	TaAffx.54367.1.S1_at	At1g31250	-	-	3e-1	At3g09700	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.43	62.2	Ta.5437.3.S1_x_at	At1g31250	-	-	8e-1	At1g37140	MCT1 (mei2 C-Terminal RRM only like 1)	O.I.	H.G.	S.X.	Please select
0.40	58.4	TaAffx.9441.1.S1_at	At1g31250	-	-	9e-1	At1g33140	PGY2 (PIGGYBACK2)	O.I.	H.G.	S.X.	Please select
0.36	51.9	TaAffx.54307.1.S1_x_at	At1g31250	-	-	3e+0	At1g30620	MUR4 (MURUS 4)	O.I.	H.G.	S.X.	Please select
0.29	39.2	Ta.5437.1.S1_at	At1g31250	-	-	4e-5	At5g23750	remorin family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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