Co-expression analysis

Gene ID Contig16630_at
Gene name
Homology with ArabidopsisSimilar to At1g31250: proline-rich family protein (HF=1e+0)
Module size 6 genes
NF 0.31
%ile 40.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4458.90.96Contig16630_atContig16630--1e+0At1g31250proline-rich family proteinO.I.H.G.S.X.
0.3849.50.96Contig5510_s_atContig5510--1e-1At5g04250OTU-like cysteine protease family proteinO.I.H.G.S.X.
0.3849.50.96Contig4647_atContig4647--3e-3At2g37990ribosome biogenesis regulatory protein (RRS1) family proteinO.I.H.G.S.X.
0.3647.10.96Contig13674_atContig13674--2e+0At5g17073unknown proteinO.I.H.G.S.X.
0.2021.10.96HA31E10r_s_atHA31E10r--1e+0At4g15620integral membrane family proteinO.I.H.G.S.X.
0.1716.90.96Contig12816_atContig12816--1e-4At4g08455BTB/POZ domain-containing proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.097.2GSM261070Albina f-17 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
4.897.0GSM261079Albina e-16 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
4.897.0GSM372999genotype: 11542 - pathogen isolates: K1 - time: 16 - rep2GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
4.296.3GSM261071Albina f-17 Hardened rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
4.296.3GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.196.2GSM261073Albina f-17 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.795.5GSM372963genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep2GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
3.595.1GSM261069Albina f-17 Control rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.494.8GSM261072Albina f-17 Hardened rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.394.6GSM261068Albina f-17 Control rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.37656.1.A1_at, orthologous to the query gene, Contig16630_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9799.9PtpAffx.37656.1.A1_atAt1g31250--4e+0At4g21560VPS28-1 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 28 HOMOLOG 1)O.I.H.G.S.X.
0.2441.8PtpAffx.880.2.S1_atAt1g31250hypothetical protein-2e-8At3g04120GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1)O.I.H.G.S.X.
0.2340.5PtpAffx.217431.1.S1_atAt1g31250hypothetical protein-3e+0At5g46250RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.2238.3PtpAffx.215482.1.S1_atAt1g31250hypothetical protein-9e+0At5g12020HSP17.6II (17.6 KDA CLASS II HEAT SHOCK PROTEIN)O.I.H.G.S.X.
0.2238.3PtpAffx.219212.1.S1_x_atAt1g31250hypothetical protein-4e-2At3g19130ATRBP47B (RNA-binding protein 47B)O.I.H.G.S.X.
0.1932.7PtpAffx.116760.1.A1_atAt1g31250--9e+0At3g49920VDAC5 (VOLTAGE DEPENDENT ANION CHANNEL 5)O.I.H.G.S.X.
0.1830.8PtpAffx.69832.1.A1_atAt1g31250--5e+0At3g21470pentatricopeptide (PPR) repeat-containing proteinO.I.H.G.S.X.
0.1729.1PtpAffx.116755.1.A1_atAt1g31250--6e-1At1g80160lactoylglutathione lyase family protein / glyoxalase I family proteinO.I.H.G.S.X.
0.1729.1PtpAffx.208029.1.S1_atAt1g31250hypothetical protein-5e+0Atcg00050-O.I.H.G.S.X.
0.1729.1PtpAffx.150591.1.S1_atAt1g31250hypothetical protein-1e+0At5g01570unknown proteinO.I.H.G.S.X.
0.1525.3Ptp.1177.1.A1_atAt1g31250--5e+0At1g02130ARA-5 (ARABIDOPSIS RAS 5)O.I.H.G.S.X.
0.1423.5PtpAffx.72440.1.S1_atAt1g31250--6e+0At4g14520DNA-directed RNA polymerase II-relatedO.I.H.G.S.X.
0.1423.5PtpAffx.16299.1.S1_atAt1g31250hypothetical protein-1e+0At2g01100unknown proteinO.I.H.G.S.X.
0.1423.5PtpAffx.204283.1.S1_atAt1g31250hypothetical protein-3e+0At5g37610voltage-gated anion channelO.I.H.G.S.X.
0.1423.5PtpAffx.212939.1.S1_atAt1g31250hypothetical protein-2e-8At5g07380unknown proteinO.I.H.G.S.X.
0.1321.6PtpAffx.69642.1.A1_atAt1g31250--1e+0At5g10625-O.I.H.G.S.X.
0.1219.6PtpAffx.150782.2.S1_atAt1g31250--2e+0At5g67370unknown proteinO.I.H.G.S.X.
0.1118.1PtpAffx.121416.1.A1_atAt1g31250hypothetical protein-9e-1At3g05860MADS-box protein (AGL45)O.I.H.G.S.X.
0.1118.1PtpAffx.9732.1.S1_atAt1g31250--2e-1At1g55475unknown proteinO.I.H.G.S.X.
0.0914.6PtpAffx.222156.1.S1_s_atAt1g31250hypothetical protein-4e-2At1g68330unknown proteinO.I.H.G.S.X.
0.0914.6PtpAffx.211405.1.S1_atAt1g31250hypothetical protein-3e-1At5g55850NOIO.I.H.G.S.X.
0.0914.6PtpAffx.202362.1.S1_atAt1g31250hypothetical protein-5e-3At3g09760zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.0914.6PtpAffx.213846.1.S1_atAt1g31250hypothetical protein-1e-1At3g04310unknown proteinO.I.H.G.S.X.
0.0711.6PtpAffx.18509.1.A1_atAt1g31250--9e-2At1g01110IQD18 (IQ-domain 18)O.I.H.G.S.X.
0.0711.6Ptp.6635.1.S1_atAt1g31250--3e-51At3g45980HTB9O.I.H.G.S.X.
0.0711.6PtpAffx.135690.1.S1_atAt1g31250hypothetical protein-1e+0At4g18940cyclic phosphodiesterase, putativeO.I.H.G.S.X.
0.069.8PtpAffx.154108.1.A1_atAt1g31250--3e-1At4g00210LBD31 (LOB DOMAIN-CONTAINING PROTEIN 31)O.I.H.G.S.X.
0.046.9PtpAffx.200658.1.S1_atAt1g31250hypothetical protein-6e-1At1g17150glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family proteinO.I.H.G.S.X.
0.046.9PtpAffx.116727.1.A1_atAt1g31250--1e-2At5g35470unknown proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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