Co-expression analysis

Gene ID	Contig16630_at
Gene name
Homology with Arabidopsis	Similar to At1g31250: proline-rich family protein (HF=1e+0)
Module size	6 genes
NF	0.31
%ile	40.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.44	58.9	0.96	Contig16630_at	Contig16630	-	-	1e+0	At1g31250	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.96	Contig5510_s_at	Contig5510	-	-	1e-1	At5g04250	OTU-like cysteine protease family protein	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.96	Contig4647_at	Contig4647	-	-	3e-3	At2g37990	ribosome biogenesis regulatory protein (RRS1) family protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.96	Contig13674_at	Contig13674	-	-	2e+0	At5g17073	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.96	HA31E10r_s_at	HA31E10r	-	-	1e+0	At4g15620	integral membrane family protein	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.96	Contig12816_at	Contig12816	-	-	1e-4	At4g08455	BTB/POZ domain-containing protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.0	97.2	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.8	97.0	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.8	97.0	GSM372999	genotype: 11542 - pathogen isolates: K1 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.2	96.3	GSM261071	Albina f-17 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.2	96.3	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.1	96.2	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.7	95.5	GSM372963	genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.5	95.1	GSM261069	Albina f-17 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.4	94.8	GSM261072	Albina f-17 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.3	94.6	GSM261068	Albina f-17 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.70526.1.A1_at, orthologous to the query gene, Contig16630_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.56	78.2	GmaAffx.70526.1.A1_at	At1g31250	-	-	7e-1	At5g53560	CB5-E (CYTOCHROME B5 ISOFORM E)	O.I.	H.G.	S.X.	Please select
0.41	58.1	PsAffx.C123000031_at	At1g31250	-	-	2e+0	At4g22930	PYR4 (PYRIMIDIN 4)	O.I.	H.G.	S.X.	Please select
0.36	50.8	PsAffx.C59000014_at	At1g31250	-	-	1e-1	At5g53910	(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative	O.I.	H.G.	S.X.	Please select
0.32	43.7	GmaAffx.75422.1.S1_at	At1g31250	-	-	1e-5	At3g57400	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	43.7	GmaAffx.15790.1.A1_at	At1g31250	-	-	2e+0	At1g70790	C2 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.29	39.0	HgAffx.19601.1.S1_at	At1g31250	-	-	4e+0	At5g51845	-	O.I.	H.G.	S.X.	Please select
0.26	33.9	PsAffx.psHB004xH08f_at	At1g31250	-	-	5e+0	At3g61840	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	26.6	HgAffx.3203.1.A1_at	At1g31250	-	-	3e+0	At5g23760	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please select
0.19	23.7	GmaAffx.14602.1.S1_at	At1g31250	-	-	2e-1	At3g45851	unknown protein	O.I.	H.G.	S.X.	Please select
0.16	19.7	HgAffx.19033.4.A1_at	At1g31250	-	-	6e-2	At1g54410	dehydrin family protein	O.I.	H.G.	S.X.	Please select
0.14	17.5	HgAffx.13668.1.S1_at	At1g31250	-	-	6e-1	At5g49710	unknown protein	O.I.	H.G.	S.X.	Please select
0.11	14.2	GmaAffx.2851.1.S1_at	At1g31250	-	-	1e-5	At5g58930	unknown protein	O.I.	H.G.	S.X.	Please select
0.10	13.0	GmaAffx.91615.1.S1_at	At1g31250	-	-	9e-5	At1g09020	SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4)	O.I.	H.G.	S.X.	Please select
0.04	7.0	GmaAffx.19890.1.S1_at	At1g31250	-	-	5e-2	At5g60680	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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