Co-expression analysis

Gene ID	Contig16549_at
Gene name
Homology with Arabidopsis	Similar to At2g38300: DNA binding / transcription factor (HF=7e-13)
Module size	6 genes
NF	0.21
%ile	25.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	90.8	0.93	Contig16549_at	Contig16549	-	-	7e-13	At2g38300	DNA binding / transcription factor	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.94	Contig11318_at	Contig11318	-	-	7e-40	At5g20020	RAN2	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.94	Contig15791_at	Contig15791	-	-	9e-1	At4g14105	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.95	Contig5293_at	Contig5293	-	-	2e-25	At4g39220	ATRER1A	O.I.	H.G.	S.X.	Please select
0.18	18.2	0.94	Contig9424_at	Contig9424	-	-	1e-6	At3g15290	3-hydroxybutyryl-CoA dehydrogenase, putative	O.I.	H.G.	S.X.	Please select
0.07	5.8	0.94	Contig14394_at	Contig14394	-	-	4e-1	At2g20625	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.7	99.4	GSM160823	19% SWC rep1	GSE6990	Barley drought stress
8.2	98.7	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.1	98.0	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.3	96.4	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.2	96.3	GSM160819	38% SWC rep1	GSE6990	Barley drought stress
3.9	95.8	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds
3.7	95.5	GSM160744	drought control rep2	GSE6990	Barley drought stress
3.6	95.3	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
3.5	95.1	GSM398283	Moroc9-75_5d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.1	94.1	GSM398273	Moroc9-75_0d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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