Co-expression analysis

Gene ID	Contig16514_at
Gene name
Homology with Arabidopsis	Similar to At2g01590: CRR3 (CHLORORESPIRATORY REDUCTION 3) (HF=1e+0)
Module size	6 genes
NF	0.81
%ile	97.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	94.0	0.96	Contig16514_at	Contig16514	-	-	1e+0	At2g01590	CRR3 (CHLORORESPIRATORY REDUCTION 3)	O.I.	H.G.	S.X.	Please select
0.91	98.1	0.96	Contig10269_at	Contig10269	-	-	7e-13	At1g80780	CCR4-NOT transcription complex protein, putative	O.I.	H.G.	S.X.	Please select
0.80	92.5	0.97	Contig12544_at	Contig12544	-	-	2e+1	At5g03100	F-box family protein	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.96	Contig18356_at	Contig18356	-	-	4e-4	At4g36400	FAD linked oxidase family protein	O.I.	H.G.	S.X.	Please select
0.63	80.3	0.96	Contig6820_at	Contig6820	-	-	7e-12	At4g13350	NIG (NSP (NUCLEAR SHUTTLE PROTEIN)-INTERACTING GTPASE)	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.97	Contig9113_at	Contig9113	-	-	2e-26	At5g11980	conserved oligomeric Golgi complex component-related / COG complex component-related	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.0	99.1	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds
5.7	97.7	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
5.0	97.2	GSM282032	Malting_day1_Morex_rep1	GSE11200	Expression data from malting barley seeds
4.5	96.7	GSM282035	Malting_day4_Morex_rep1	GSE11200	Expression data from malting barley seeds
3.6	95.3	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.4	94.8	GSM71140	OWB-D stress replicate 2	GSE3170	Barley single feature polymorphisms and drought stress gene expression
3.4	94.8	GSM215727	Control (DMSO) treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
3.3	94.6	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.3	94.6	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.0	93.8	GSM215730	Control (DMSO) treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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