Co-expression analysis

Gene ID Contig16495_at
Gene name
Homology with ArabidopsisSimilar to At1g28280: VQ motif-containing protein (HF=4e-1)
Module size 6 genes
NF 0.05
%ile 5.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4458.90.83Contig16495_atContig16495--4e-1At1g28280VQ motif-containing proteinO.I.H.G.S.X.
0.4356.40.83Contig8760_atContig8760--3e-3At2g42610LSH10 (LIGHT SENSITIVE HYPOCOTYLS 10)O.I.H.G.S.X.
0.3240.30.84Contig16494_s_atContig16494--9e-5At5g08030glycerophosphoryl diester phosphodiesterase family proteinO.I.H.G.S.X.
0.032.60.84Contig17497_atContig17497--2e+0At1g76190auxin-responsive family proteinO.I.H.G.S.X.
0.021.80.84Contig4317_atContig4317--2e-1At1g36060AP2 domain-containing transcription factor, putativeO.I.H.G.S.X.
0.011.10.83Contig20427_atContig20427--1e+0At2g48100exonuclease family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.099.4GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
9.198.9GSM382233Root_Hg2GSE15295Mercury toxicity in barley rootsLink to GEO
8.498.8GSM238431Embryo 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
8.398.8GSM238429Embryo 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
7.698.6GSM238430Embryo 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
7.598.6GSM282031Malting_day1_Harrington_rep1GSE11200Expression data from malting barley seedsLink to GEO
6.898.3GSM282037Malting_day1_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
6.097.9GSM382232Root_Hg1GSE15295Mercury toxicity in barley rootsLink to GEO
5.397.4GSM238438Embryo 72 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.897.0GSM382236Root_Control2GSE15295Mercury toxicity in barley rootsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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