Co-expression analysis

Gene ID Contig1648_at
Gene name
Homology with ArabidopsisSimilar to At1g66200: ATGSR2 (HF=3e-18)
Module size 7 genes
NF 0.43
%ile 60.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6077.30.89Contig1648_atContig1648--3e-18At1g66200ATGSR2O.I.H.G.S.X.
0.7388.70.90HB25K17r_atHB25K17r--2e+0At4g09260unknown proteinO.I.H.G.S.X.
0.5066.90.90Contig18921_atContig18921--1e+0At1g49520SWIB complex BAF60b domain-containing proteinO.I.H.G.S.X.
0.4762.20.87Contig12570_atContig12570--5e-29At3g53570AFC1 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1)O.I.H.G.S.X.
0.3342.60.88Contig14990_atContig14990isoamylase-8e-25At4g09020ISA3 (ISOAMYLASE 3)O.I.H.G.S.X.
0.3342.60.89HVSMEn0017F07r2_atHVSMEn0017F07r2--3e-7At1g78560bile acid:sodium symporter family proteinO.I.H.G.S.X.
0.1716.90.88Contig8408_atContig8408--5e-20At1g43130LCV2 (LIKE COV 2)O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5572.00.81HB21C01r_atHB21C01r--1e+0At5g23600tRNA 2'phosphotransferase, putativeO.I.H.G.S.X.
0.5066.90.85Contig26363_atContig26363--4e+0At5g42325transcription elongation factor-relatedO.I.H.G.S.X.
0.4762.20.80HVSMEm0019J23r2_atHVSMEm0019J23r2--2e+0At2g29830kelch repeat-containing F-box family proteinO.I.H.G.S.X.
0.4661.00.85S0001000055K01F1_atS0001000055K01F1--3e+0At2g24310unknown proteinO.I.H.G.S.X.
0.4661.00.83HVSMEl0011N19r2_x_atHVSMEl0011N19r2--5e-1At5g51900cytochrome P450 familyO.I.H.G.S.X.
0.4356.40.82Contig23855_atContig23855--6e-5At1g19340methyltransferase MT-A70 family proteinO.I.H.G.S.X.
0.4255.20.81Contig24680_atContig24680--2e+0At2g28630KCS12 (3-KETOACYL-COA SYNTHASE 12)O.I.H.G.S.X.
0.3849.50.82Contig23267_atContig23267--5e+0At3g03830auxin-responsive protein, putativeO.I.H.G.S.X.
0.3647.10.85HV11M18u_atHV11M18u--8e-1At4g33020ZIP9O.I.H.G.S.X.
0.3647.10.86Contig2809_atContig2809--5e-1At1g21550calcium-binding protein, putativeO.I.H.G.S.X.
0.3342.60.88Contig2267_s_atContig2267ADP-glucose pyrophosphorylase small subunit-1e-135At5g48300ADG1 (ADP GLUCOSE PYROPHOSPHORYLASE 1)O.I.H.G.S.X.
0.3240.30.81Contig18641_atContig18641--5e-4At1g68850peroxidase, putativeO.I.H.G.S.X.
0.3138.60.88Contig12361_atContig12361--5e+0At4g30660hydrophobic protein, putative / low temperature and salt responsive protein, putativeO.I.H.G.S.X.
0.2835.50.85S0001100116E08F1_x_atS0001100116E08F1--1e+1At3g29639-O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.099.5GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
11.599.3GSM431547pathogen isolates: Mock - rep2GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
8.498.8GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
4.897.0GSM282038Malting_kilned_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO
4.796.9GSM431569pathogen isolates: Mock inoculated control - rep2GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO
4.696.8GSM382234Root_Hg3GSE15295Mercury toxicity in barley rootsLink to GEO
4.396.4GSM431549pathogen isolates: Polymyxa graminis - rep1GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
3.895.7GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.494.8GSM372963genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep2GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
3.494.8GSM146359Golden Promise Root Control, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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