CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig1648_at

Gene name
Homology with Arabidopsis Similar to At1g66200: ATGSR2 (HF=3e-18)

Module size 7 genes

NF 0.43

%ile 60.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.60 77.3 0.89 Contig1648_at Contig1648 - - 3e-18 At1g66200 ATGSR2 O.I. H.G. S.X.
0.73 88.7 0.90 HB25K17r_at HB25K17r - - 2e+0 At4g09260 unknown protein O.I. H.G. S.X.
0.50 66.9 0.90 Contig18921_at Contig18921 - - 1e+0 At1g49520 SWIB complex BAF60b domain-containing protein O.I. H.G. S.X.
0.47 62.2 0.87 Contig12570_at Contig12570 - - 5e-29 At3g53570 AFC1 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1) O.I. H.G. S.X.
0.33 42.6 0.88 Contig14990_at Contig14990 isoamylase - 8e-25 At4g09020 ISA3 (ISOAMYLASE 3) O.I. H.G. S.X.
0.33 42.6 0.89 HVSMEn0017F07r2_at HVSMEn0017F07r2 - - 3e-7 At1g78560 bile acid:sodium symporter family protein O.I. H.G. S.X.
0.17 16.9 0.88 Contig8408_at Contig8408 - - 5e-20 At1g43130 LCV2 (LIKE COV 2) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.0 99.5 GSM261047 after 3 days in mannitol medium rep3 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
11.5 99.3 GSM431547 pathogen isolates: Mock - rep2 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
8.4 98.8 GSM261046 after 3 days in mannitol medium rep2 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.8 97.0 GSM282038 Malting_kilned_Morex_rep1 GSE11200 Expression data from malting barley seeds
4.7 96.9 GSM431569 pathogen isolates: Mock inoculated control - rep2 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
4.6 96.8 GSM382234 Root_Hg3 GSE15295 Mercury toxicity in barley roots
4.3 96.4 GSM431549 pathogen isolates: Polymyxa graminis - rep1 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
3.8 95.7 GSM261045 after 3 days in mannitol medium rep1 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.4 94.8 GSM372963 genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.4 94.8 GSM146359 Golden Promise Root Control, biological rep 3 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Inter-species module comparison

A co-expression module including the poplar gene, Ptp.2573.1.S1_at, orthologous to the query gene, Contig1648_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 91.1 Ptp.2573.1.S1_at At1g66200 hypothetical protein - 1e-95 At5g37600 ATGSR1 O.I. H.G. S.X.
0.80 96.0 PtpAffx.108986.1.S1_at At1g66200 hypothetical protein - 3e-38 At5g54800 GPT1 O.I. H.G. S.X.
0.73 93.6 Ptp.3608.1.S1_s_at At1g66200 trans-caffeoyl-coa 3-o-methyltransferase - 6e-78 At4g34050 caffeoyl-CoA 3-O-methyltransferase, putative O.I. H.G. S.X.
0.67 91.1 PtpAffx.12443.4.A1_s_at At1g66200 cytochrome P450 cinnamate 4-hydroxylase - 7e-24 At2g30490 C4H (CINNAMATE-4-HYDROXYLASE) O.I. H.G. S.X.
0.55 82.2 Ptp.791.1.S1_s_at At1g66200 cinnamyl alcohol dehydrogenase - 6e-26 At3g19450 ATCAD4 O.I. H.G. S.X.
0.40 67.0 PtpAffx.211196.1.S1_x_at At1g66200 hypothetical protein - 1e-116 At5g54800 GPT1 O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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