Co-expression analysis

Gene ID Contig1648_at
Gene name
Homology with ArabidopsisSimilar to At1g66200: ATGSR2 (HF=3e-18)
Module size 7 genes
NF 0.43
%ile 60.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6077.30.89Contig1648_atContig1648--3e-18At1g66200ATGSR2O.I.H.G.S.X.
0.7388.70.90HB25K17r_atHB25K17r--2e+0At4g09260unknown proteinO.I.H.G.S.X.
0.5066.90.90Contig18921_atContig18921--1e+0At1g49520SWIB complex BAF60b domain-containing proteinO.I.H.G.S.X.
0.4762.20.87Contig12570_atContig12570--5e-29At3g53570AFC1 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1)O.I.H.G.S.X.
0.3342.60.88Contig14990_atContig14990isoamylase-8e-25At4g09020ISA3 (ISOAMYLASE 3)O.I.H.G.S.X.
0.3342.60.89HVSMEn0017F07r2_atHVSMEn0017F07r2--3e-7At1g78560bile acid:sodium symporter family proteinO.I.H.G.S.X.
0.1716.90.88Contig8408_atContig8408--5e-20At1g43130LCV2 (LIKE COV 2)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.099.5GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
11.599.3GSM431547pathogen isolates: Mock - rep2GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
8.498.8GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
4.897.0GSM282038Malting_kilned_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO
4.796.9GSM431569pathogen isolates: Mock inoculated control - rep2GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO
4.696.8GSM382234Root_Hg3GSE15295Mercury toxicity in barley rootsLink to GEO
4.396.4GSM431549pathogen isolates: Polymyxa graminis - rep1GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
3.895.7GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.494.8GSM372963genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep2GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
3.494.8GSM146359Golden Promise Root Control, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO

Inter-species module comparison

A co-expression module including the soybean gene, Gma.3518.1.S1_at, orthologous to the query gene, Contig1648_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.98100.0Gma.3518.1.S1_atAt1g66200glutamate--ammonia ligase-2e-109At5g37600ATGSR1O.I.H.G.S.X.
0.4463.3Gma.2142.1.S1_atAt1g66200--9e-25At4g14950unknown proteinO.I.H.G.S.X.
0.4463.3GmaAffx.90199.1.A1_atAt1g66200--1e-44At3g57870SCE1 (SUMO CONJUGATION ENZYME 1)O.I.H.G.S.X.
0.4360.6Gma.10421.1.S1_atAt1g66200--2e-21At5g63870PP7 (SERINE/THREONINE PHOSPHATASE 7)O.I.H.G.S.X.
0.4259.3Gma.827.2.S1_x_atAt1g66200--7e-40At2g36060ubiquitin-conjugating enzyme family proteinO.I.H.G.S.X.
0.3954.5Gma.2460.1.S1_atAt1g66200--2e-49At4g39910ATUBP3 (ARABIDOPSIS THALIANA UBIQUITIN-SPECIFIC PROTEASE 3)O.I.H.G.S.X.
0.3954.5Gma.5028.1.S1_x_atAt1g66200--4e-21At1g02305cathepsin B-like cysteine protease, putativeO.I.H.G.S.X.
0.3954.5Gma.5803.1.S1_atAt1g66200--4e-17At5g03630ATMDAR2O.I.H.G.S.X.
0.3853.3Gma.7956.1.A1_atAt1g66200--3e-20At3g12100cation efflux family protein / metal tolerance protein, putativeO.I.H.G.S.X.
0.3751.7Gma.3121.1.S1_atAt1g66200--4e+0At4g36800RCE1 (RUB1 CONJUGATING ENZYME 1)O.I.H.G.S.X.
0.3650.8Gma.1626.1.S1_a_atAt1g66200--2e-25At4g01400-O.I.H.G.S.X.
0.3650.8Gma.1686.1.S1_atAt1g66200--5e-141At5g58290RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3)O.I.H.G.S.X.
0.3548.6GmaAffx.74539.1.S1_atAt1g66200--1e-7At1g26670VTI1BO.I.H.G.S.X.
0.3447.2Gma.827.1.S1_atAt1g66200--2e-6At3g52560UEV1D-4 (UBIQUITIN E2 VARIANT 1D-4)O.I.H.G.S.X.
0.3447.2Gma.6651.1.S1_atAt1g66200--4e+0At4g26010peroxidase, putativeO.I.H.G.S.X.
0.3346.1Gma.5883.1.S1_a_atAt1g66200--7e-115At3g19980ATFYPP3 (FLOWER-SPECIFIC, PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3)O.I.H.G.S.X.
0.3243.7Gma.6464.1.S1_s_atAt1g66200--4e-41At2g19790clathrin adaptor complex small chain family proteinO.I.H.G.S.X.
0.3243.7GmaAffx.1991.1.S1_atAt1g66200--1e-8At5g47120ATBI1 (BAX INHIBITOR 1)O.I.H.G.S.X.
0.2939.0Gma.9587.1.A1_atAt1g66200--6e+0At5g47060senescence-associated protein-relatedO.I.H.G.S.X.
0.2839.0GmaAffx.89701.1.A1_s_atAt1g66200--7e-11At1g15370-O.I.H.G.S.X.
0.2735.7Gma.4270.1.S1_s_atAt1g66200--2e-19At3g46010ADF1 (ACTIN DEPOLYMERIZING FACTOR 1)O.I.H.G.S.X.
0.2735.7GmaAffx.60847.1.A1_atAt1g66200--7e-15At5g38630ACYB-1O.I.H.G.S.X.
0.2532.6Gma.3838.1.S1_atAt1g66200--4e-8At4g15940fumarylacetoacetate hydrolase family proteinO.I.H.G.S.X.
0.2532.6Gma.3881.1.S1_s_atAt1g66200--8e-23At2g30490C4H (CINNAMATE-4-HYDROXYLASE)O.I.H.G.S.X.
0.2430.9GmaAffx.86632.1.S1_atAt1g66200--9e-2At5g53045-O.I.H.G.S.X.
0.2430.9Gma.3012.1.A1_atAt1g66200--2e-6At2g13690PRLI-interacting factor, putativeO.I.H.G.S.X.
0.2430.9GmaAffx.92496.1.S1_s_atAt1g66200--1e-75At1g78870UBC35 (UBIQUITIN-CONJUGATING ENZYME 35)O.I.H.G.S.X.
0.2430.9Gma.2905.1.S1_atAt1g66200--4e-172At4g29040RPT2a (regulatory particle AAA-ATPase 2a)O.I.H.G.S.X.
0.2329.9Gma.17700.2.S1_atAt1g66200--2e-19At2g20760protein binding / structural moleculeO.I.H.G.S.X.
0.2228.1Gma.15387.2.S1_atAt1g66200--2e-52At5g41700UBC8 (UBIQUITIN CONJUGATING ENZYME 8)O.I.H.G.S.X.
0.2228.1Gma.16130.1.S1_atAt1g66200--5e-4At1g63500ATP binding / binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinaseO.I.H.G.S.X.
0.2228.1Gma.1305.1.S1_s_atAt1g66200thioredoxin-9e-2At5g39950ATTRX2 (THIOREDOXIN 2)O.I.H.G.S.X.
0.2228.1Gma.8648.1.S1_s_atAt1g66200--5e-1At3g17160unknown proteinO.I.H.G.S.X.
0.2228.1Gma.745.1.S1_a_atAt1g66200--3e-11At5g67590FRO1 (FROSTBITE1)O.I.H.G.S.X.
0.2228.1Gma.5803.1.S1_a_atAt1g66200--4e-17At5g03630ATMDAR2O.I.H.G.S.X.
0.2126.6Gma.8460.1.S1_atAt1g66200acyl-CoA oxidase-7e-39At4g16760ACX1 (ACYL-COA OXIDASE 1)O.I.H.G.S.X.
0.2126.6Gma.3521.1.S1_atAt1g66200--1e-47At2g32520dienelactone hydrolase family proteinO.I.H.G.S.X.
0.2126.6GmaAffx.89819.1.S1_s_atAt1g66200--6e-61At3g18820ATRAB7B (ARABIDOPSIS RAB GTPASE HOMOLOG G3F)O.I.H.G.S.X.
0.1923.7Gma.4383.1.S1_a_atAt1g66200--9e-34At1g64520RPN12a (Regulatory Particle non-ATPase 12a)O.I.H.G.S.X.
0.1822.3Gma.17053.3.S1_atAt1g66200Cultivar JS385 glyceraldehyde 3-phosphate dehydrogenase-3e-45At1g13440GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2)O.I.H.G.S.X.
0.1721.2Gma.17071.1.S1_atAt1g66200--6e-2At1g43890ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18)O.I.H.G.S.X.
0.1619.7Gma.6150.2.S1_s_atAt1g66200--1e-23At5g59880ADF3 (ACTIN DEPOLYMERIZING FACTOR 3)O.I.H.G.S.X.
0.1518.7GmaAffx.51048.1.S1_s_atAt1g66200--6e-5At1g29150ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)O.I.H.G.S.X.
0.1518.7Gma.11223.1.S1_atAt1g66200--4e-169At3g28710H+-transporting two-sector ATPase, putativeO.I.H.G.S.X.
0.1417.5Gma.5762.1.S1_atAt1g66200aminoalcoholphosphotransferase-2e-47At1g13560AAPT1 (AMINOALCOHOLPHOSPHOTRANSFERASE 1)O.I.H.G.S.X.
0.1316.3Gma.4375.1.S1_s_atAt1g66200glutamate--ammonia ligase /// cytosolic glutamine synthetase beta2-6e-30At5g37600ATGSR1O.I.H.G.S.X.
0.1215.1Gma.10799.1.S1_atAt1g66200--4e-96At4g26100CK1 (CASEIN KINASE 1)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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