Co-expression analysis

Gene ID Contig1648_at
Gene name
Homology with ArabidopsisSimilar to At1g66200: ATGSR2 (HF=3e-18)
Module size 7 genes
NF 0.43
%ile 60.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6077.30.89Contig1648_atContig1648--3e-18At1g66200ATGSR2O.I.H.G.S.X.
0.7388.70.90HB25K17r_atHB25K17r--2e+0At4g09260unknown proteinO.I.H.G.S.X.
0.5066.90.90Contig18921_atContig18921--1e+0At1g49520SWIB complex BAF60b domain-containing proteinO.I.H.G.S.X.
0.4762.20.87Contig12570_atContig12570--5e-29At3g53570AFC1 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1)O.I.H.G.S.X.
0.3342.60.88Contig14990_atContig14990isoamylase-8e-25At4g09020ISA3 (ISOAMYLASE 3)O.I.H.G.S.X.
0.3342.60.89HVSMEn0017F07r2_atHVSMEn0017F07r2--3e-7At1g78560bile acid:sodium symporter family proteinO.I.H.G.S.X.
0.1716.90.88Contig8408_atContig8408--5e-20At1g43130LCV2 (LIKE COV 2)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.099.5GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
11.599.3GSM431547pathogen isolates: Mock - rep2GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
8.498.8GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
4.897.0GSM282038Malting_kilned_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO
4.796.9GSM431569pathogen isolates: Mock inoculated control - rep2GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO
4.696.8GSM382234Root_Hg3GSE15295Mercury toxicity in barley rootsLink to GEO
4.396.4GSM431549pathogen isolates: Polymyxa graminis - rep1GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
3.895.7GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.494.8GSM372963genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep2GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
3.494.8GSM146359Golden Promise Root Control, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At1g66200, orthologous to the query gene, Contig1648_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
0.3032.1At1g66200842935ATGSR2encodes a cytosolic glutamate synthetase, this enzyme has low affinity with substrate ammoniumO.I.H.G.S.X.
0.6781.6At1g12110837763NRT1.1Encodes NRT1.1 (CHL1), a dual-affinity nitrate transporter. The protein is expressed in guard cells and function in stomatal opening. Mutants have less transpiration and are more tolerant to drought. Expressed in lateral roots. Involved in nitrate signaling which enables the plant root system to detect and exploit nitrate-rich soil patches. Comparing to the wild type, the mutant displays a strongly decreased lateral root proliferation phenotype in nitrate rich patches on growth medium.O.I.H.G.S.X.
0.4050.8At4g30190829142AHA2belongs to the P-type ATPase superfamily of cation-transporting ATPases, pumps protons out of the cell, generating a proton gradient that drives the active transport of nutrients by proton symport. has two autoinhibitory regions within the C-terminal domO.I.H.G.S.X.
0.061.4At3g24503822042ALDH2C4Arabidopsis thaliana aldehyde dehydrogenase AtALDH1a mRNA. a sinapaldehyde dehydrogenase catalyzes both the oxidation of coniferylaldehyde and sinapaldehyde forming ferulic acid and sinapic acid, respectivelyO.I.H.G.S.X.
0.030.6At1g67940843122ATNAP3member of NAP subfamilyO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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