CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig1648_at

Gene name
Homology with Arabidopsis Similar to At1g66200: ATGSR2 (HF=3e-18)

Module size 7 genes

NF 0.43

%ile 60.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.60 77.3 0.89 Contig1648_at Contig1648 - - 3e-18 At1g66200 ATGSR2 O.I. H.G. S.X.
0.73 88.7 0.90 HB25K17r_at HB25K17r - - 2e+0 At4g09260 unknown protein O.I. H.G. S.X.
0.50 66.9 0.90 Contig18921_at Contig18921 - - 1e+0 At1g49520 SWIB complex BAF60b domain-containing protein O.I. H.G. S.X.
0.47 62.2 0.87 Contig12570_at Contig12570 - - 5e-29 At3g53570 AFC1 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1) O.I. H.G. S.X.
0.33 42.6 0.88 Contig14990_at Contig14990 isoamylase - 8e-25 At4g09020 ISA3 (ISOAMYLASE 3) O.I. H.G. S.X.
0.33 42.6 0.89 HVSMEn0017F07r2_at HVSMEn0017F07r2 - - 3e-7 At1g78560 bile acid:sodium symporter family protein O.I. H.G. S.X.
0.17 16.9 0.88 Contig8408_at Contig8408 - - 5e-20 At1g43130 LCV2 (LIKE COV 2) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.0 99.5 GSM261047 after 3 days in mannitol medium rep3 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
11.5 99.3 GSM431547 pathogen isolates: Mock - rep2 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
8.4 98.8 GSM261046 after 3 days in mannitol medium rep2 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.8 97.0 GSM282038 Malting_kilned_Morex_rep1 GSE11200 Expression data from malting barley seeds
4.7 96.9 GSM431569 pathogen isolates: Mock inoculated control - rep2 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
4.6 96.8 GSM382234 Root_Hg3 GSE15295 Mercury toxicity in barley roots
4.3 96.4 GSM431549 pathogen isolates: Polymyxa graminis - rep1 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
3.8 95.7 GSM261045 after 3 days in mannitol medium rep1 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.4 94.8 GSM372963 genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.4 94.8 GSM146359 Golden Promise Root Control, biological rep 3 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At1g66200, orthologous to the query gene, Contig1648_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.30 32.1 At1g66200 842935 ATGSR2 encodes a cytosolic glutamate synthetase, this enzyme has low affinity with substrate ammonium O.I. H.G. S.X.
0.67 81.6 At1g12110 837763 NRT1.1 Encodes NRT1.1 (CHL1), a dual-affinity nitrate transporter. The protein is expressed in guard cells and function in stomatal opening. Mutants have less transpiration and are more tolerant to drought. Expressed in lateral roots. Involved in nitrate signaling which enables the plant root system to detect and exploit nitrate-rich soil patches. Comparing to the wild type, the mutant displays a strongly decreased lateral root proliferation phenotype in nitrate rich patches on growth medium. O.I. H.G. S.X.
0.40 50.8 At4g30190 829142 AHA2 belongs to the P-type ATPase superfamily of cation-transporting ATPases, pumps protons out of the cell, generating a proton gradient that drives the active transport of nutrients by proton symport. has two autoinhibitory regions within the C-terminal dom O.I. H.G. S.X.
0.06 1.4 At3g24503 822042 ALDH2C4 Arabidopsis thaliana aldehyde dehydrogenase AtALDH1a mRNA. a sinapaldehyde dehydrogenase catalyzes both the oxidation of coniferylaldehyde and sinapaldehyde forming ferulic acid and sinapic acid, respectively O.I. H.G. S.X.
0.03 0.6 At1g67940 843122 ATNAP3 member of NAP subfamily O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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