Co-expression analysis

Gene ID Contig16483_at
Gene name
Homology with ArabidopsisSimilar to At4g39640: GGT1 (GAMMA-GLUTAMYL TRANSPEPTIDASE 1) (HF=8e-3)
Module size 6 genes
NF 0.82
%ile 97.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6784.70.91Contig16483_atContig16483--8e-3At4g39640GGT1 (GAMMA-GLUTAMYL TRANSPEPTIDASE 1)O.I.H.G.S.X.
0.8394.00.91HM04K08u_s_atHM04K08u--9e-1At1g65000unknown proteinO.I.H.G.S.X.
0.8394.00.93Contig18923_atContig18923--2e+0At3g47130F-box family protein-relatedO.I.H.G.S.X.
0.8394.00.95Contig18390_atContig18390--4e+0At1g53110-O.I.H.G.S.X.
0.8092.50.96Contig12988_atContig12988--5e-1At5g55970zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.5066.90.98Contig17917_atContig17917--5e+0At5g10140FLC (FLOWERING LOCUS C)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.599.2GSM238409Pericarp 4DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
8.498.8GSM238417Endosperm 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.398.1GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.097.9GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.995.8GSM261074Albina e-16 Control rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.995.8GSM238416Endosperm 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.394.6GSM238419Endosperm 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.294.3GSM261075Albina e-16 Control rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.093.8GSM261076Albina e-16 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
2.993.4GSM261077Albina e-16 Hardened rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1621171_at, orthologous to the query gene, Contig16483_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9699.71621171_atAt4g39640--2e-85At5g14640SK13 (SHAGGY-LIKE KINASE 13)O.I.H.G.S.X.
0.6183.21620896_atAt4g39640hypothetical protein LOC100253196-1e+0At3g62000O-methyltransferase family 3 proteinO.I.H.G.S.X.
0.5577.31613351_atAt4g39640hypothetical protein LOC100252023-2e-1At5g12970C2 domain-containing proteinO.I.H.G.S.X.
0.5273.91613677_atAt4g39640hypothetical protein LOC100256792-3e-15At2g04780FLA7 (FASCICLIN-LIKE ARABINOOGALACTAN 7)O.I.H.G.S.X.
0.5072.71621880_s_atAt4g39640hypothetical protein LOC100262668-3e+0At5g14360ubiquitin family proteinO.I.H.G.S.X.
0.4969.31607678_atAt4g39640hypothetical protein LOC100254822-3e-25At2g34710PHB (PHABULOSA)O.I.H.G.S.X.
0.4767.71620164_atAt4g39640hypothetical protein LOC100263547-6e+0At5g10160beta-hydroxyacyl-ACP dehydratase, putativeO.I.H.G.S.X.
0.4767.71617440_atAt4g39640hypothetical protein LOC100247017-8e-2At5g61470zinc finger (C2H2 type) family proteinO.I.H.G.S.X.
0.4464.11617712_atAt4g39640--4e-4At2g14890AGP9 (ARABINOGALACTAN PROTEIN 9)O.I.H.G.S.X.
0.4057.71621735_atAt4g39640hypothetical protein LOC100245551-1e+0At5g06660unknown proteinO.I.H.G.S.X.
0.4057.71618251_atAt4g39640--6e-9At3g5343060S ribosomal protein L12 (RPL12B)O.I.H.G.S.X.
0.4057.71611378_atAt4g39640hypothetical protein LOC100244478-2e-8At1g60630leucine-rich repeat family proteinO.I.H.G.S.X.
0.3853.61609302_atAt4g39640similar to somatic embryogenesis receptor kinase-7e-14At1g34210SERK2 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 2)O.I.H.G.S.X.
0.3853.61611382_atAt4g39640hypothetical protein LOC100264955-2e-6At3g53850-O.I.H.G.S.X.
0.3853.61608474_atAt4g39640hypothetical protein LOC100261256-1e-3At1g09840ATSK41 (SHAGGY-LIKE PROTEIN KINASE 41)O.I.H.G.S.X.
0.3751.71613787_atAt4g39640hypothetical protein LOC100250201-4e-4At5g24105AGP41 (ARABINOGALACTAN-PROTEIN 41)O.I.H.G.S.X.
0.3751.71615462_atAt4g39640--5e+0At3g55520immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putativeO.I.H.G.S.X.
0.3751.71608586_atAt4g39640hypothetical protein LOC100241814-4e-18At4g21960PRXR1O.I.H.G.S.X.
0.3751.71608036_a_atAt4g39640--2e+0At2g31450endonuclease-relatedO.I.H.G.S.X.
0.3548.51615898_atAt4g39640hypothetical protein LOC100247526-6e-2At2g22100RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.3548.51621003_atAt4g39640similar to HB2 homeodomain protein-2e-1At5g46700TRN2 (TORNADO 2)O.I.H.G.S.X.
0.3548.51616521_atAt4g39640beta-tubulin-9e-56At5g62700TUB3O.I.H.G.S.X.
0.3548.51617368_atAt4g39640similar to beta-1,3-glucanase-1e+0At2g47110UBQ6O.I.H.G.S.X.
0.3446.81622002_atAt4g39640hypothetical protein LOC100264846-2e-1At1g29951CPuORF35 (Conserved peptide upstream open reading frame 35)O.I.H.G.S.X.
0.3345.71615295_atAt4g39640hypothetical protein LOC100259092-4e-1At4g08190Ras-related GTP-binding protein, putativeO.I.H.G.S.X.
0.3243.11609092_atAt4g39640hypothetical protein LOC100244042-2e+0At1g14900HMGA (HIGH MOBILITY GROUP A)O.I.H.G.S.X.
0.3243.11618871_atAt4g39640hypothetical protein LOC100265907-3e-7At4g38660thaumatin, putativeO.I.H.G.S.X.
0.3039.41610468_atAt4g39640hypothetical protein LOC100241666-1e+0At5g67110ALC (ALCATRAZ)O.I.H.G.S.X.
0.2937.71620990_atAt4g39640hypothetical protein LOC100247103-1e-18At1g19330unknown proteinO.I.H.G.S.X.
0.2937.71609989_atAt4g39640--2e+1At4g08190Ras-related GTP-binding protein, putativeO.I.H.G.S.X.
0.2937.71608829_atAt4g39640hypothetical protein LOC100258592-9e-24At4g03415catalytic/ protein serine/threonine phosphataseO.I.H.G.S.X.
0.2734.01606707_atAt4g39640hypothetical protein LOC100248187-2e-2At2g41630TFIIB (TRANSCRIPTION FACTOR II B)O.I.H.G.S.X.
0.2734.01611521_atAt4g39640--5e+0At5g39700MYB89 (myb domain protein 89)O.I.H.G.S.X.
0.2632.01622084_atAt4g39640hypothetical protein LOC100256435-1e+0At5g51451unknown proteinO.I.H.G.S.X.
0.2632.01620804_atAt4g39640hypothetical protein LOC100267227-3e-114At1g55360unknown proteinO.I.H.G.S.X.
0.2530.51621668_atAt4g39640similar to Histone H2B-2e-27At3g46030HTB11O.I.H.G.S.X.
0.1718.21609174_atAt4g39640hypothetical protein LOC100252716-5e-48At3g25500AFH1 (FORMIN HOMOLOGY 1)O.I.H.G.S.X.
0.1616.71619954_atAt4g39640hypothetical protein LOC100257028-7e-16At5g07830AtGUS2 (Arabidopsis thaliana glucuronidase 2)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage