Co-expression analysis

Gene ID	Contig16483_at
Gene name
Homology with Arabidopsis	Similar to At4g39640: GGT1 (GAMMA-GLUTAMYL TRANSPEPTIDASE 1) (HF=8e-3)
Module size	6 genes
NF	0.82
%ile	97.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	0.91	Contig16483_at	Contig16483	-	-	8e-3	At4g39640	GGT1 (GAMMA-GLUTAMYL TRANSPEPTIDASE 1)	O.I.	H.G.	S.X.	Please select
0.83	94.0	0.91	HM04K08u_s_at	HM04K08u	-	-	9e-1	At1g65000	unknown protein	O.I.	H.G.	S.X.	Please select
0.83	94.0	0.93	Contig18923_at	Contig18923	-	-	2e+0	At3g47130	F-box family protein-related	O.I.	H.G.	S.X.	Please select
0.83	94.0	0.95	Contig18390_at	Contig18390	-	-	4e+0	At1g53110	-	O.I.	H.G.	S.X.	Please select
0.80	92.5	0.96	Contig12988_at	Contig12988	-	-	5e-1	At5g55970	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.98	Contig17917_at	Contig17917	-	-	5e+0	At5g10140	FLC (FLOWERING LOCUS C)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.5	99.2	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
8.4	98.8	GSM238417	Endosperm 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.3	98.1	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.0	97.9	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.9	95.8	GSM261074	Albina e-16 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.9	95.8	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.3	94.6	GSM238419	Endosperm 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.2	94.3	GSM261075	Albina e-16 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.0	93.8	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.9	93.4	GSM261077	Albina e-16 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Inter-species module comparison

A co-expression module including the wheat gene, Ta.21001.1.S1_at, orthologous to the query gene, Contig16483_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.56	78.6	Ta.21001.1.S1_at	At4g39640	-	-	1e+1	At3g56190	ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.80	92.2	Ta.5056.1.A1_a_at	At4g39640	-	-	8e-2	At3g54260	unknown protein	O.I.	H.G.	S.X.	Please select
0.76	90.1	TaAffx.19975.1.S1_at	At4g39640	-	-	9e+0	At1g08220	-	O.I.	H.G.	S.X.	Please select
0.75	89.8	TaAffx.38265.1.S1_x_at	At4g39640	-	-	3e+0	At1g30800	-	O.I.	H.G.	S.X.	Please select
0.74	89.4	Ta.9525.1.S1_x_at	At4g39640	-	-	7e-1	At5g59140	SKP1 family protein	O.I.	H.G.	S.X.	Please select
0.74	89.4	TaAffx.38265.1.S1_at	At4g39640	-	-	3e+0	At1g30800	-	O.I.	H.G.	S.X.	Please select
0.70	87.2	Ta.4352.1.S1_a_at	At4g39640	CRC-related protein	-	1e-7	At1g69180	CRC (CRABS CLAW)	O.I.	H.G.	S.X.	Please select
0.64	83.6	Ta.4569.1.S1_at	At4g39640	-	-	5e+0	At5g38435	SPH8 (S-PROTEIN HOMOLOGUE 8)	O.I.	H.G.	S.X.	Please select
0.61	82.0	TaAffx.19975.2.A1_at	At4g39640	-	-	3e-1	At5g51400	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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