CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig16483_at

Gene name
Homology with Arabidopsis Similar to At4g39640: GGT1 (GAMMA-GLUTAMYL TRANSPEPTIDASE 1) (HF=8e-3)

Module size 6 genes

NF 0.82

%ile 97.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 84.7 0.91 Contig16483_at Contig16483 - - 8e-3 At4g39640 GGT1 (GAMMA-GLUTAMYL TRANSPEPTIDASE 1) O.I. H.G. S.X.
0.83 94.0 0.91 HM04K08u_s_at HM04K08u - - 9e-1 At1g65000 unknown protein O.I. H.G. S.X.
0.83 94.0 0.93 Contig18923_at Contig18923 - - 2e+0 At3g47130 F-box family protein-related O.I. H.G. S.X.
0.83 94.0 0.95 Contig18390_at Contig18390 - - 4e+0 At1g53110 - O.I. H.G. S.X.
0.80 92.5 0.96 Contig12988_at Contig12988 - - 5e-1 At5g55970 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.50 66.9 0.98 Contig17917_at Contig17917 - - 5e+0 At5g10140 FLC (FLOWERING LOCUS C) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.5 99.2 GSM238409 Pericarp 4DAF; seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
8.4 98.8 GSM238417 Endosperm 16DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
6.3 98.1 GSM238408 Pericarp 4DAF; seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
6.0 97.9 GSM238411 Pericarp 8DAF; seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
3.9 95.8 GSM261074 Albina e-16 Control rep1 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.9 95.8 GSM238416 Endosperm 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
3.3 94.6 GSM238419 Endosperm 25DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
3.2 94.3 GSM261075 Albina e-16 Control rep2 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.0 93.8 GSM261076 Albina e-16 Control rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.9 93.4 GSM261077 Albina e-16 Hardened rep1 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Inter-species module comparison

A co-expression module including the rice gene, Os04g0457500, orthologous to the query gene, Contig16483_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 Os04g0457500 At4g39640 - Gamma-glutamyltranspeptidase family protein 7e+0 At4g12380 unknown protein O.I. H.G. S.X.
0.61 81.2 Os07g0667300 At4g39640 - Zn-finger, CONSTANS type domain containing protein 5e-5 At2g22100 RNA recognition motif (RRM)-containing protein O.I. H.G. S.X.
0.61 81.2 Os01g0889900 At4g39640 - S-locus glycoprotein family protein 1e-3 At1g34300 lectin protein kinase family protein O.I. H.G. S.X.
0.44 58.1 Os01g0900900 At4g39640 - Ovarian tumour, otubain domain containing protein 2e+0 At1g75180 unknown protein O.I. H.G. S.X.
0.29 31.1 Os05g0516100 At4g39640 - Conserved hypothetical protein 3e-1 At5g44570 unknown protein O.I. H.G. S.X.
0.17 12.6 Os06g0612300 At4g39640 - Zn-finger, C2H2 type domain containing protein 2e-39 At3g20880 zinc finger (C2H2 type) protein (WIP4) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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