Co-expression analysis

Gene ID Contig16466_at
Gene name
Homology with ArabidopsisSimilar to At2g46700: calcium-dependent protein kinase, putative / CDPK, putative (HF=4e-15)
Module size 10 genes
NF 0.24
%ile 29.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9095.70.93Contig16466_atContig16466--4e-15At2g46700calcium-dependent protein kinase, putative / CDPK, putativeO.I.H.G.S.X.
0.4053.10.96Contig19283_atContig19283--2e+1Atmg00840-O.I.H.G.S.X.
0.3037.00.94Contig4789_atContig4789--1e-14At5g42790PAF1O.I.H.G.S.X.
0.2732.10.96Contig16432_atContig16432--1e-2At3g12250TGA6 (TGACG MOTIF-BINDING FACTOR 6)O.I.H.G.S.X.
0.2630.40.94Contig8893_atContig8893--2e-14At5g61970signal recognition particle-related / SRP-relatedO.I.H.G.S.X.
0.2427.20.96Contig12784_atContig12784--2e-10At1g28520VOZ1 (VASCULAR PLANT ONE ZINC FINGER PROTEIN)O.I.H.G.S.X.
0.2021.10.96Contig11977_atContig11977--6e-1At5g62490ATHVA22BO.I.H.G.S.X.
0.1412.90.96Contig14607_atContig14607--2e+0At4g37440unknown proteinO.I.H.G.S.X.
0.1210.40.95Contig20845_atContig20845--5e+0At5g28360ACS3 (1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE LIKE PSEUDOGENE)O.I.H.G.S.X.
0.108.40.95Contig20343_atContig20343--3e-1At2g20805-O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.799.4GSM71156Morex stress and unstress replicate 3GSE3170 Barley single feature polymorphisms and drought stress gene expressionLink to GEO
9.699.0GSM238430Embryo 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
9.299.0GSM238431Embryo 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
7.498.5GSM71140OWB-D stress replicate 2GSE3170 Barley single feature polymorphisms and drought stress gene expressionLink to GEO
7.198.4GSM238432Embryo 0 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.697.7GSM238433Embryo 0 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.397.4GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.297.4GSM238429Embryo 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.297.4GSM71141OWB-D stress replicate 3GSE3170 Barley single feature polymorphisms and drought stress gene expressionLink to GEO
4.997.1GSM71154Morex stress and unstress replicate 1GSE3170 Barley single feature polymorphisms and drought stress gene expressionLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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