Co-expression analysis

Gene ID	Contig16455_at
Gene name
Homology with Arabidopsis	Similar to At3g46880: unknown protein (HF=1e-1)
Module size	6 genes
NF	0.57
%ile	78.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.97	Contig16455_at	Contig16455	-	-	1e-1	At3g46880	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.97	Contig14264_at	Contig14264	-	-	2e+0	At1g48780	unknown protein	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.97	Contig18744_at	Contig18744	-	-	2e+0	At5g41630	F-box family protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.97	Contig1434_s_at	Contig1434	-	-	2e-1	At5g58580	ATL63 (ARABIDOPSIS TÓ	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.96	Contig16886_at	Contig16886	-	-	5e+0	At5g60460	sec61beta family protein	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.97	Contig841_x_at	Contig841	-	-	1e-35	At2g34420	LHB1B2	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.2	96.3	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.5	95.1	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.5	95.1	GSM146357	Golden Promise Root Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.3	94.6	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.1	94.1	GSM146368	Maythorpe Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.0	93.8	GSM146358	Golden Promise Root Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
2.9	93.4	GSM282041	Control_dryseed_Morex_rep2	GSE11200	Expression data from malting barley seeds
2.8	93.1	GSM238438	Embryo 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.7	92.7	GSM431548	pathogen isolates: Mock - rep3	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
2.7	92.7	GSM146364	Maythorpe Root Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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