Co-expression analysis

Gene ID Contig16431_at
Gene name
Homology with ArabidopsisSimilar to At4g32590: ferredoxin-related (HF=2e+0)
Module size 6 genes
NF 0.11
%ile 13.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4458.90.93Contig16431_atContig16431--2e+0At4g32590ferredoxin-relatedO.I.H.G.S.X.
0.1514.10.93Contig8156_atContig8156--8e-1At1g43860transcription factorO.I.H.G.S.X.
0.1514.10.93Contig5710_atContig5710--6e-7At4g36910LEJ2 (LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2)O.I.H.G.S.X.
0.1514.10.93Contig11880_atContig11880--2e+0At2g03110RNA binding / nucleic acid bindingO.I.H.G.S.X.
0.064.80.92Contig9029_atContig9029--4e-8At2g40890CYP98A3 (cytochrome P450, family 98, subfamily A, polypeptide 3)O.I.H.G.S.X.
0.054.10.93Contig10265_atContig10265--2e-7At5g243403'-5' exonuclease domain-containing proteinO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.4458.90.94Contig15782_atContig15782--1e+0At2g42760unknown proteinO.I.H.G.S.X.
0.2224.20.94Contig9319_atContig9319--3e-3At3g66654peptidyl-prolyl cis-trans isomerase cyclophilin-type family proteinO.I.H.G.S.X.
0.2122.60.93Contig5994_atContig5994--3e+0At5g56060ATP binding / nucleotide binding / phenylalanine-tRNA ligaseO.I.H.G.S.X.
0.2021.10.94Contig1717_s_atContig1717--4e-6At3g50980XERO1 (DEHYDRIN XERO 1)O.I.H.G.S.X.
0.1919.60.94Contig8797_atContig8797--1e-2At4g09080TOC75-IVO.I.H.G.S.X.
0.1818.20.90Contig10025_s_atContig10025--6e-1At1g63630pentatricopeptide (PPR) repeat-containing proteinO.I.H.G.S.X.
0.1716.90.93Contig14572_atContig14572--3e-5At4g21410protein kinase family proteinO.I.H.G.S.X.
0.1716.90.94Contig16313_atContig16313--1e-1At1g35170-O.I.H.G.S.X.
0.1615.30.94Contig14377_atContig14377--6e+0At4g02040unknown proteinO.I.H.G.S.X.
0.1311.60.91Contig5903_s_atContig5903--5e+0At5g55610unknown proteinO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.499.2GSM440960Stressed lemma_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO
7.898.6GSM440966Stressed palea_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO
7.598.6GSM440968Stressed palea_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
7.498.5GSM440961Stressed lemma_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO
6.898.3GSM440967Stressed palea_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO
6.398.1GSM440962Stressed lemma_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
4.796.9GSM372998genotype: 11542 - pathogen isolates: K1 - time: 16 - rep1GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
4.496.6GSM440972Stressed awn_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO
4.096.0GSM419977Palea_Rep3GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
4.096.0GSM440965Control palea_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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