Co-expression analysis

Gene ID Contig16431_at
Gene name
Homology with ArabidopsisSimilar to At4g32590: ferredoxin-related (HF=2e+0)
Module size 6 genes
NF 0.11
%ile 13.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4458.90.93Contig16431_atContig16431--2e+0At4g32590ferredoxin-relatedO.I.H.G.S.X.
0.1514.10.93Contig8156_atContig8156--8e-1At1g43860transcription factorO.I.H.G.S.X.
0.1514.10.93Contig5710_atContig5710--6e-7At4g36910LEJ2 (LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2)O.I.H.G.S.X.
0.1514.10.93Contig11880_atContig11880--2e+0At2g03110RNA binding / nucleic acid bindingO.I.H.G.S.X.
0.064.80.92Contig9029_atContig9029--4e-8At2g40890CYP98A3 (cytochrome P450, family 98, subfamily A, polypeptide 3)O.I.H.G.S.X.
0.054.10.93Contig10265_atContig10265--2e-7At5g243403'-5' exonuclease domain-containing proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.499.2GSM440960Stressed lemma_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO
7.898.6GSM440966Stressed palea_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO
7.598.6GSM440968Stressed palea_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
7.498.5GSM440961Stressed lemma_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO
6.898.3GSM440967Stressed palea_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO
6.398.1GSM440962Stressed lemma_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
4.796.9GSM372998genotype: 11542 - pathogen isolates: K1 - time: 16 - rep1GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
4.496.6GSM440972Stressed awn_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO
4.096.0GSM419977Palea_Rep3GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
4.096.0GSM440965Control palea_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO

Inter-species module comparison

A co-expression module including the maize gene, Zm.1850.1.A1_at, orthologous to the query gene, Contig16431_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8094.0Zm.1850.1.A1_atAt4g32590hypothetical protein LOC100273447-3e-8At4g28730glutaredoxin family proteinO.I.H.G.S.X.
0.5065.7Zm.13622.1.A1_atAt4g32590hypothetical protein LOC100274236-5e-2At2g26350PEX10O.I.H.G.S.X.
0.4455.7Zm.6634.1.A1_atAt4g32590--3e-2At2g33720transcription factorO.I.H.G.S.X.
0.3844.2Zm.5274.1.S1_atAt4g32590triose phosphate/phosphate translocator, non-green plastid,chloroplast-4e-18At5g33320CUE1 (CAB UNDEREXPRESSED 1)O.I.H.G.S.X.
0.3131.6Zm.5131.1.A1_atAt4g32590--5e+0At5g49620AtMYB78 (myb domain protein 78)O.I.H.G.S.X.
0.2318.6Zm.3492.1.A1_atAt4g32590hypothetical protein LOC100275578-2e-1At1g16490MYB58 (MYB DOMAIN PROTEIN 58)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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