CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig16431_at

Gene name
Homology with Arabidopsis Similar to At4g32590: ferredoxin-related (HF=2e+0)

Module size 6 genes

NF 0.11

%ile 13.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.44 58.9 0.93 Contig16431_at Contig16431 - - 2e+0 At4g32590 ferredoxin-related O.I. H.G. S.X.
0.15 14.1 0.93 Contig8156_at Contig8156 - - 8e-1 At1g43860 transcription factor O.I. H.G. S.X.
0.15 14.1 0.93 Contig5710_at Contig5710 - - 6e-7 At4g36910 LEJ2 (LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2) O.I. H.G. S.X.
0.15 14.1 0.93 Contig11880_at Contig11880 - - 2e+0 At2g03110 RNA binding / nucleic acid binding O.I. H.G. S.X.
0.06 4.8 0.92 Contig9029_at Contig9029 - - 4e-8 At2g40890 CYP98A3 (cytochrome P450, family 98, subfamily A, polypeptide 3) O.I. H.G. S.X.
0.05 4.1 0.93 Contig10265_at Contig10265 - - 2e-7 At5g24340 3'-5' exonuclease domain-containing protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.44	58.9	0.93	Contig16431_at	Contig16431	-	-	2e+0	At4g32590	ferredoxin-related	O.I.	H.G.	S.X.
0.15	14.1	0.93	Contig8156_at	Contig8156	-	-	8e-1	At1g43860	transcription factor	O.I.	H.G.	S.X.
0.15	14.1	0.93	Contig5710_at	Contig5710	-	-	6e-7	At4g36910	LEJ2 (LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2)	O.I.	H.G.	S.X.
0.15	14.1	0.93	Contig11880_at	Contig11880	-	-	2e+0	At2g03110	RNA binding / nucleic acid binding	O.I.	H.G.	S.X.
0.06	4.8	0.92	Contig9029_at	Contig9029	-	-	4e-8	At2g40890	CYP98A3 (cytochrome P450, family 98, subfamily A, polypeptide 3)	O.I.	H.G.	S.X.
0.05	4.1	0.93	Contig10265_at	Contig10265	-	-	2e-7	At5g24340	3'-5' exonuclease domain-containing protein	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.4 99.2 GSM440960 Stressed lemma_Rep1 GSE17669 Gene expression in the barley spike during drought stress
7.8 98.6 GSM440966 Stressed palea_Rep1 GSE17669 Gene expression in the barley spike during drought stress
7.5 98.6 GSM440968 Stressed palea_Rep3 GSE17669 Gene expression in the barley spike during drought stress
7.4 98.5 GSM440961 Stressed lemma_Rep2 GSE17669 Gene expression in the barley spike during drought stress
6.8 98.3 GSM440967 Stressed palea_Rep2 GSE17669 Gene expression in the barley spike during drought stress
6.3 98.1 GSM440962 Stressed lemma_Rep3 GSE17669 Gene expression in the barley spike during drought stress
4.7 96.9 GSM372998 genotype: 11542 - pathogen isolates: K1 - time: 16 - rep1 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.4 96.6 GSM440972 Stressed awn_Rep1 GSE17669 Gene expression in the barley spike during drought stress
4.0 96.0 GSM419977 Palea_Rep3 GSE16754 Comparative transcriptional profiling of organs of the barley spike
4.0 96.0 GSM440965 Control palea_Rep3 GSE17669 Gene expression in the barley spike during drought stress

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
10.4	99.2	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
7.8	98.6	GSM440966	Stressed palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
7.5	98.6	GSM440968	Stressed palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
7.4	98.5	GSM440961	Stressed lemma_Rep2	GSE17669	Gene expression in the barley spike during drought stress
6.8	98.3	GSM440967	Stressed palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
6.3	98.1	GSM440962	Stressed lemma_Rep3	GSE17669	Gene expression in the barley spike during drought stress
4.7	96.9	GSM372998	genotype: 11542 - pathogen isolates: K1 - time: 16 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.4	96.6	GSM440972	Stressed awn_Rep1	GSE17669	Gene expression in the barley spike during drought stress
4.0	96.0	GSM419977	Palea_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
4.0	96.0	GSM440965	Control palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress

Inter-species module comparison

A co-expression module including the grape gene, 1616414_at, orthologous to the query gene, Contig16431_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.97 99.9 1616414_at At4g32590 hypothetical protein LOC100250753 - 1e-6 At4g32590 ferredoxin-related O.I. H.G. S.X.
0.68 88.0 1618209_at At4g32590 - - 3e-17 At4g09010 APX4 (ASCORBATE PEROXIDASE 4) O.I. H.G. S.X.
0.63 84.3 1609873_at At4g32590 hypothetical protein LOC100247523 - 2e-69 At1g67280 lactoylglutathione lyase, putative / glyoxalase I, putative O.I. H.G. S.X.
0.63 84.3 1617840_at At4g32590 hypothetical protein LOC100253425 - 5e-16 At4g01150 unknown protein O.I. H.G. S.X.
0.57 79.8 1611933_at At4g32590 hypothetical protein LOC100266645 - 2e-6 At3g52150 RNA recognition motif (RRM)-containing protein O.I. H.G. S.X.
0.57 79.8 1614140_at At4g32590 hypothetical protein LOC100250226 - 1e-16 At1g32080 membrane protein, putative O.I. H.G. S.X.
0.56 79.4 1617204_at At4g32590 hypothetical protein LOC100264070 - 2e-21 At2g33800 ribosomal protein S5 family protein O.I. H.G. S.X.
0.56 79.4 1617733_at At4g32590 - - 4e+0 At5g19210 DEAD/DEAH box helicase, putative O.I. H.G. S.X.
0.50 72.7 1616560_at At4g32590 hypothetical protein LOC100243962 - 3e-24 At1g19150 LHCA6 O.I. H.G. S.X.
0.49 69.3 1613729_at At4g32590 hypothetical protein LOC100251530 - 1e-25 At1g79850 RPS17 (RIBOSOMAL PROTEIN S17) O.I. H.G. S.X.
0.49 69.3 1622803_at At4g32590 hypothetical protein LOC100245108 - 8e-24 At5g13510 ribosomal protein L10 family protein O.I. H.G. S.X.
0.48 68.8 1616097_at At4g32590 hypothetical protein LOC100259438 - 2e-4 At2g43560 immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein O.I. H.G. S.X.
0.47 67.7 1608528_at At4g32590 hypothetical protein LOC100263742 - 4e-4 At1g03600 photosystem II family protein O.I. H.G. S.X.
0.44 64.1 1612085_at At4g32590 hypothetical protein LOC100265702 - 2e+0 At2g41945 unknown protein O.I. H.G. S.X.
0.44 64.1 1612880_s_at At4g32590 hypothetical protein LOC100262788 - 4e-20 At5g45680 FK506-binding protein 1 (FKBP13) O.I. H.G. S.X.
0.44 64.1 1610525_at At4g32590 hypothetical protein LOC100260680 - 2e-15 At1g50900 - O.I. H.G. S.X.
0.44 64.1 1608376_at At4g32590 similar to ribosomal protein S17 - 3e-29 At1g48350 ribosomal protein L18 family protein O.I. H.G. S.X.
0.43 61.5 1614290_at At4g32590 hypothetical protein LOC100253525 - 1e-73 At3g48420 haloacid dehalogenase-like hydrolase family protein O.I. H.G. S.X.
0.39 54.9 1614293_at At4g32590 hypothetical protein LOC100257708 - 5e-3 At5g21430 DNAJ heat shock N-terminal domain-containing protein O.I. H.G. S.X.
0.38 53.6 1609530_at At4g32590 hypothetical protein LOC100248460 - 1e+0 At2g29180 unknown protein O.I. H.G. S.X.
0.38 53.6 1606932_at At4g32590 hypothetical protein LOC100262366 /// hypothetical protein LOC100262616 - 8e-3 At2g23670 YCF37 (Arabidopsis homolog of Synechocystis YCF37) O.I. H.G. S.X.
0.36 50.7 1616390_at At4g32590 hypothetical protein LOC100248042 - 1e-41 At3g13120 30S ribosomal protein S10, chloroplast, putative O.I. H.G. S.X.
0.36 50.7 1607452_at At4g32590 hypothetical protein LOC100242924 - 5e-10 At1g50320 ATHX O.I. H.G. S.X.
0.34 46.8 1609784_s_at At4g32590 hypothetical protein LOC100261841 - 9e-22 At1g23740 oxidoreductase, zinc-binding dehydrogenase family protein O.I. H.G. S.X.
0.34 46.8 1621672_at At4g32590 hypothetical protein LOC100267324 - 2e-34 At5g05740 EGY2 O.I. H.G. S.X.
0.31 41.3 1612544_at At4g32590 hypothetical protein LOC100260093 - 5e-13 At5g40950 RPL27 (RIBOSOMAL PROTEIN LARGE SUBUNIT 27) O.I. H.G. S.X.
0.30 39.4 1616096_s_at At4g32590 hypothetical protein LOC100241260 - 5e-16 At3g27160 GHS1 (GLUCOSE HYPERSENSITIVE 1) O.I. H.G. S.X.
0.29 37.7 1610349_s_at At4g32590 similar to SIGB (SIGMA FACTOR B); DNA binding / DNA-directed RNA polymerase/ transcription factor - 5e-15 At1g08540 SIG2 (RNA POLYMERASE SIGMA SUBUNIT 2) O.I. H.G. S.X.
0.29 37.7 1618750_at At4g32590 hypothetical protein LOC100241679 - 2e-50 At2g34860 EDA3 (embryo sac development arrest 3) O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.97	99.9	1616414_at	At4g32590	hypothetical protein LOC100250753	-	1e-6	At4g32590	ferredoxin-related	O.I.	H.G.	S.X.
0.68	88.0	1618209_at	At4g32590	-	-	3e-17	At4g09010	APX4 (ASCORBATE PEROXIDASE 4)	O.I.	H.G.	S.X.
0.63	84.3	1609873_at	At4g32590	hypothetical protein LOC100247523	-	2e-69	At1g67280	lactoylglutathione lyase, putative / glyoxalase I, putative	O.I.	H.G.	S.X.
0.63	84.3	1617840_at	At4g32590	hypothetical protein LOC100253425	-	5e-16	At4g01150	unknown protein	O.I.	H.G.	S.X.
0.57	79.8	1611933_at	At4g32590	hypothetical protein LOC100266645	-	2e-6	At3g52150	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.
0.57	79.8	1614140_at	At4g32590	hypothetical protein LOC100250226	-	1e-16	At1g32080	membrane protein, putative	O.I.	H.G.	S.X.
0.56	79.4	1617204_at	At4g32590	hypothetical protein LOC100264070	-	2e-21	At2g33800	ribosomal protein S5 family protein	O.I.	H.G.	S.X.
0.56	79.4	1617733_at	At4g32590	-	-	4e+0	At5g19210	DEAD/DEAH box helicase, putative	O.I.	H.G.	S.X.
0.50	72.7	1616560_at	At4g32590	hypothetical protein LOC100243962	-	3e-24	At1g19150	LHCA6	O.I.	H.G.	S.X.
0.49	69.3	1613729_at	At4g32590	hypothetical protein LOC100251530	-	1e-25	At1g79850	RPS17 (RIBOSOMAL PROTEIN S17)	O.I.	H.G.	S.X.
0.49	69.3	1622803_at	At4g32590	hypothetical protein LOC100245108	-	8e-24	At5g13510	ribosomal protein L10 family protein	O.I.	H.G.	S.X.
0.48	68.8	1616097_at	At4g32590	hypothetical protein LOC100259438	-	2e-4	At2g43560	immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein	O.I.	H.G.	S.X.
0.47	67.7	1608528_at	At4g32590	hypothetical protein LOC100263742	-	4e-4	At1g03600	photosystem II family protein	O.I.	H.G.	S.X.
0.44	64.1	1612085_at	At4g32590	hypothetical protein LOC100265702	-	2e+0	At2g41945	unknown protein	O.I.	H.G.	S.X.
0.44	64.1	1612880_s_at	At4g32590	hypothetical protein LOC100262788	-	4e-20	At5g45680	FK506-binding protein 1 (FKBP13)	O.I.	H.G.	S.X.
0.44	64.1	1610525_at	At4g32590	hypothetical protein LOC100260680	-	2e-15	At1g50900	-	O.I.	H.G.	S.X.
0.44	64.1	1608376_at	At4g32590	similar to ribosomal protein S17	-	3e-29	At1g48350	ribosomal protein L18 family protein	O.I.	H.G.	S.X.
0.43	61.5	1614290_at	At4g32590	hypothetical protein LOC100253525	-	1e-73	At3g48420	haloacid dehalogenase-like hydrolase family protein	O.I.	H.G.	S.X.
0.39	54.9	1614293_at	At4g32590	hypothetical protein LOC100257708	-	5e-3	At5g21430	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.
0.38	53.6	1609530_at	At4g32590	hypothetical protein LOC100248460	-	1e+0	At2g29180	unknown protein	O.I.	H.G.	S.X.
0.38	53.6	1606932_at	At4g32590	hypothetical protein LOC100262366 /// hypothetical protein LOC100262616	-	8e-3	At2g23670	YCF37 (Arabidopsis homolog of Synechocystis YCF37)	O.I.	H.G.	S.X.
0.36	50.7	1616390_at	At4g32590	hypothetical protein LOC100248042	-	1e-41	At3g13120	30S ribosomal protein S10, chloroplast, putative	O.I.	H.G.	S.X.
0.36	50.7	1607452_at	At4g32590	hypothetical protein LOC100242924	-	5e-10	At1g50320	ATHX	O.I.	H.G.	S.X.
0.34	46.8	1609784_s_at	At4g32590	hypothetical protein LOC100261841	-	9e-22	At1g23740	oxidoreductase, zinc-binding dehydrogenase family protein	O.I.	H.G.	S.X.
0.34	46.8	1621672_at	At4g32590	hypothetical protein LOC100267324	-	2e-34	At5g05740	EGY2	O.I.	H.G.	S.X.
0.31	41.3	1612544_at	At4g32590	hypothetical protein LOC100260093	-	5e-13	At5g40950	RPL27 (RIBOSOMAL PROTEIN LARGE SUBUNIT 27)	O.I.	H.G.	S.X.
0.30	39.4	1616096_s_at	At4g32590	hypothetical protein LOC100241260	-	5e-16	At3g27160	GHS1 (GLUCOSE HYPERSENSITIVE 1)	O.I.	H.G.	S.X.
0.29	37.7	1610349_s_at	At4g32590	similar to SIGB (SIGMA FACTOR B); DNA binding / DNA-directed RNA polymerase/ transcription factor	-	5e-15	At1g08540	SIG2 (RNA POLYMERASE SIGMA SUBUNIT 2)	O.I.	H.G.	S.X.
0.29	37.7	1618750_at	At4g32590	hypothetical protein LOC100241679	-	2e-50	At2g34860	EDA3 (embryo sac development arrest 3)	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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Gene ID	Contig16431_at
Gene name
Homology with Arabidopsis	Similar to At4g32590: ferredoxin-related (HF=2e+0)
Module size	6 genes
NF	0.11
%ile	13.3

Co-expression analysis

Gene ID Contig16431_at Gene name Homology with ArabidopsisSimilar to At4g32590: ferredoxin-related (HF=2e+0) Module size 6 genes NF 0.11 %ile 13.3

Co-expressed genes

Click More genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxOryza_sativaPopulus_trichocarpaTriticum_aestivumZea_mays

Gene ID Contig16431_at

Gene name
Homology with Arabidopsis Similar to At4g32590: ferredoxin-related (HF=2e+0)

Module size 6 genes

NF 0.11

%ile 13.3

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays