Co-expression analysis

Gene ID	Contig16431_at
Gene name
Homology with Arabidopsis	Similar to At4g32590: ferredoxin-related (HF=2e+0)
Module size	6 genes
NF	0.11
%ile	13.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.44	58.9	0.93	Contig16431_at	Contig16431	-	-	2e+0	At4g32590	ferredoxin-related	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.93	Contig8156_at	Contig8156	-	-	8e-1	At1g43860	transcription factor	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.93	Contig5710_at	Contig5710	-	-	6e-7	At4g36910	LEJ2 (LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2)	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.93	Contig11880_at	Contig11880	-	-	2e+0	At2g03110	RNA binding / nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.06	4.8	0.92	Contig9029_at	Contig9029	-	-	4e-8	At2g40890	CYP98A3 (cytochrome P450, family 98, subfamily A, polypeptide 3)	O.I.	H.G.	S.X.	Please select
0.05	4.1	0.93	Contig10265_at	Contig10265	-	-	2e-7	At5g24340	3'-5' exonuclease domain-containing protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.4	99.2	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
7.8	98.6	GSM440966	Stressed palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
7.5	98.6	GSM440968	Stressed palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
7.4	98.5	GSM440961	Stressed lemma_Rep2	GSE17669	Gene expression in the barley spike during drought stress
6.8	98.3	GSM440967	Stressed palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
6.3	98.1	GSM440962	Stressed lemma_Rep3	GSE17669	Gene expression in the barley spike during drought stress
4.7	96.9	GSM372998	genotype: 11542 - pathogen isolates: K1 - time: 16 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.4	96.6	GSM440972	Stressed awn_Rep1	GSE17669	Gene expression in the barley spike during drought stress
4.0	96.0	GSM419977	Palea_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
4.0	96.0	GSM440965	Control palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress

Inter-species module comparison

A co-expression module including the wheat gene, Ta.11368.1.S1_at, orthologous to the query gene, Contig16431_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	89.1	Ta.11368.1.S1_at	At4g32590	-	-	1e-1	At4g32590	ferredoxin-related	O.I.	H.G.	S.X.	Please select
0.65	83.9	Ta.14673.1.S1_x_at	At4g32590	-	-	4e+0	At3g06730	thioredoxin family protein	O.I.	H.G.	S.X.	Please select
0.52	73.7	TaAffx.3774.1.S1_at	At4g32590	-	-	4e-2	At2g37240	-	O.I.	H.G.	S.X.	Please select
0.51	73.0	Ta.14673.1.S1_at	At4g32590	-	-	4e+0	At3g06730	thioredoxin family protein	O.I.	H.G.	S.X.	Please select
0.51	73.0	Ta.645.2.S1_x_at	At4g32590	-	-	4e+0	At2g41100	TCH3 (TOUCH 3)	O.I.	H.G.	S.X.	Please select
0.49	69.7	Ta.27320.1.S1_s_at	At4g32590	-	-	8e-115	At1g50250	FTSH1 (FtsH protease 1)	O.I.	H.G.	S.X.	Please select
0.49	69.7	Ta.28197.1.S1_at	At4g32590	-	-	2e-60	At3g14420	(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative	O.I.	H.G.	S.X.	Please select
0.49	69.7	Ta.5590.1.S1_x_at	At4g32590	-	-	1e+0	At1g37140	MCT1 (mei2 C-Terminal RRM only like 1)	O.I.	H.G.	S.X.	Please select
0.47	67.9	Ta.28435.1.S1_at	At4g32590	-	-	7e+0	At4g25950	VATG3 (vacuolar ATP synthase G3)	O.I.	H.G.	S.X.	Please select
0.45	65.2	Ta.8196.1.S1_x_at	At4g32590	-	-	9e-3	At1g63970	ISPF	O.I.	H.G.	S.X.	Please select
0.45	65.2	Ta.21501.1.S1_at	At4g32590	-	-	1e-2	At1g21840	UREF (urease accessory protein F)	O.I.	H.G.	S.X.	Please select
0.44	64.5	Ta.9308.2.S1_a_at	At4g32590	-	-	2e+0	At3g61070	PEX11E	O.I.	H.G.	S.X.	Please select
0.44	64.5	TaAffx.116357.1.A1_at	At4g32590	-	-	5e-16	At1g77930	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.43	62.2	Ta.568.1.S1_at	At4g32590	-	-	1e-24	At2g13360	AGT (ALANINE:GLYOXYLATE AMINOTRANSFERASE)	O.I.	H.G.	S.X.	Please select
0.42	60.9	Ta.8368.1.S1_at	At4g32590	-	-	2e+0	At5g07460	PMSR2 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 2)	O.I.	H.G.	S.X.	Please select
0.41	59.6	Ta.9308.1.S1_at	At4g32590	-	-	4e-5	At1g01820	PEX11C (PEROXIN 11C)	O.I.	H.G.	S.X.	Please select
0.41	59.6	TaAffx.58678.1.S1_at	At4g32590	-	-	2e+0	At4g01671	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	56.1	Ta.9229.1.S1_x_at	At4g32590	-	-	2e-32	At5g62790	DXR (1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE)	O.I.	H.G.	S.X.	Please select
0.38	54.7	TaAffx.30393.1.S1_at	At4g32590	-	-	2e-12	At2g47910	CRR6 (chlororespiratory reduction 6)	O.I.	H.G.	S.X.	Please select
0.35	49.8	Ta.8219.1.S1_at	At4g32590	-	-	2e+0	At5g13850	NACA3 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 3)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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