Co-expression analysis

Gene ID	Contig16431_at
Gene name
Homology with Arabidopsis	Similar to At4g32590: ferredoxin-related (HF=2e+0)
Module size	6 genes
NF	0.11
%ile	13.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.44	58.9	0.93	Contig16431_at	Contig16431	-	-	2e+0	At4g32590	ferredoxin-related	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.93	Contig8156_at	Contig8156	-	-	8e-1	At1g43860	transcription factor	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.93	Contig5710_at	Contig5710	-	-	6e-7	At4g36910	LEJ2 (LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2)	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.93	Contig11880_at	Contig11880	-	-	2e+0	At2g03110	RNA binding / nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.06	4.8	0.92	Contig9029_at	Contig9029	-	-	4e-8	At2g40890	CYP98A3 (cytochrome P450, family 98, subfamily A, polypeptide 3)	O.I.	H.G.	S.X.	Please select
0.05	4.1	0.93	Contig10265_at	Contig10265	-	-	2e-7	At5g24340	3'-5' exonuclease domain-containing protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.4	99.2	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
7.8	98.6	GSM440966	Stressed palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
7.5	98.6	GSM440968	Stressed palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
7.4	98.5	GSM440961	Stressed lemma_Rep2	GSE17669	Gene expression in the barley spike during drought stress
6.8	98.3	GSM440967	Stressed palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
6.3	98.1	GSM440962	Stressed lemma_Rep3	GSE17669	Gene expression in the barley spike during drought stress
4.7	96.9	GSM372998	genotype: 11542 - pathogen isolates: K1 - time: 16 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.4	96.6	GSM440972	Stressed awn_Rep1	GSE17669	Gene expression in the barley spike during drought stress
4.0	96.0	GSM419977	Palea_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
4.0	96.0	GSM440965	Control palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress

Inter-species module comparison

A co-expression module including the poplar gene, Ptp.2366.1.S1_at, orthologous to the query gene, Contig16431_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	Ptp.2366.1.S1_at	At4g32590	-	-	2e-44	At4g32590	ferredoxin-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.80	96.0	Ptp.2295.1.A1_at	At4g32590	hypothetical protein	-	6e+0	At5g65510	AIL7 (AINTEGUMENTA-like 7)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	Ptp.982.1.A1_s_at	At4g32590	hypothetical protein	-	5e-38	At5g16980	NADP-dependent oxidoreductase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.63	88.1	PtpAffx.28344.1.S1_at	At4g32590	hypothetical protein	-	1e-14	At3g47860	apolipoprotein D-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.59	84.9	PtpAffx.1601.6.A1_a_at	At4g32590	-	-	6e-53	At2g39730	RCA (RUBISCO ACTIVASE)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.22220.2.A1_s_at	At4g32590	hypothetical protein	-	4e-7	At3g63410	APG1 (ALBINO OR PALE GREEN MUTANT 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage