Co-expression analysis

Gene ID	Contig16431_at
Gene name
Homology with Arabidopsis	Similar to At4g32590: ferredoxin-related (HF=2e+0)
Module size	6 genes
NF	0.11
%ile	13.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.44	58.9	0.93	Contig16431_at	Contig16431	-	-	2e+0	At4g32590	ferredoxin-related	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.93	Contig8156_at	Contig8156	-	-	8e-1	At1g43860	transcription factor	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.93	Contig5710_at	Contig5710	-	-	6e-7	At4g36910	LEJ2 (LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2)	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.93	Contig11880_at	Contig11880	-	-	2e+0	At2g03110	RNA binding / nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.06	4.8	0.92	Contig9029_at	Contig9029	-	-	4e-8	At2g40890	CYP98A3 (cytochrome P450, family 98, subfamily A, polypeptide 3)	O.I.	H.G.	S.X.	Please select
0.05	4.1	0.93	Contig10265_at	Contig10265	-	-	2e-7	At5g24340	3'-5' exonuclease domain-containing protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.4	99.2	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
7.8	98.6	GSM440966	Stressed palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
7.5	98.6	GSM440968	Stressed palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
7.4	98.5	GSM440961	Stressed lemma_Rep2	GSE17669	Gene expression in the barley spike during drought stress
6.8	98.3	GSM440967	Stressed palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
6.3	98.1	GSM440962	Stressed lemma_Rep3	GSE17669	Gene expression in the barley spike during drought stress
4.7	96.9	GSM372998	genotype: 11542 - pathogen isolates: K1 - time: 16 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.4	96.6	GSM440972	Stressed awn_Rep1	GSE17669	Gene expression in the barley spike during drought stress
4.0	96.0	GSM419977	Palea_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
4.0	96.0	GSM440965	Control palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.11231.1.S1_at, orthologous to the query gene, Contig16431_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.86	93.0	GmaAffx.11231.1.S1_at	At4g32590	-	-	4e-12	At4g32590	ferredoxin-related	O.I.	H.G.	S.X.	Please select
0.53	74.2	Gma.16474.1.S1_at	At4g32590	-	-	2e-4	At5g64840	ATGCN5 (A. THALIANA GENERAL CONTROL NON-REPRESSIBLE 5)	O.I.	H.G.	S.X.	Please select
0.47	66.6	Gma.13441.1.S1_at	At4g32590	-	-	6e-3	At5g02120	OHP (ONE HELIX PROTEIN)	O.I.	H.G.	S.X.	Please select
0.44	63.3	Gma.8776.1.S1_at	At4g32590	-	-	4e-47	At1g16720	HCF173 (high chlorophyll fluorescence phenotype 173)	O.I.	H.G.	S.X.	Please select
0.38	53.3	GmaAffx.18093.1.S1_at	At4g32590	-	-	3e-9	At5g24120	SIGE (SIGMA FACTOR E)	O.I.	H.G.	S.X.	Please select
0.37	51.7	Gma.13178.1.S1_at	At4g32590	-	-	4e+0	At4g30620	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	50.8	Gma.10532.1.S1_at	At4g32590	-	-	3e+0	At5g53790	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	48.6	Gma.7563.1.S1_at	At4g32590	-	-	3e-24	At1g66330	senescence-associated family protein	O.I.	H.G.	S.X.	Please select
0.34	47.2	GmaAffx.3743.1.A1_at	At4g32590	-	-	3e+0	At3g25250	AGC2-1 (OXIDATIVE SIGNAL-INDUCIBLE1)	O.I.	H.G.	S.X.	Please select
0.34	47.2	Gma.2408.1.S1_at	At4g32590	-	-	4e-101	At3g27925	DEGP1 (DegP protease 1)	O.I.	H.G.	S.X.	Please select
0.29	39.0	GmaAffx.84144.1.A1_s_at	At4g32590	-	-	1e+1	At4g28560	RIC7 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 7)	O.I.	H.G.	S.X.	Please select
0.29	39.0	Gma.13225.1.S1_at	At4g32590	-	-	3e-8	At5g65840	-	O.I.	H.G.	S.X.	Please select
0.29	39.0	Gma.11874.1.A1_at	At4g32590	-	-	1e+1	At5g38080	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	39.0	Gma.11167.1.S1_at	At4g32590	-	-	1e-42	At5g64940	ATATH13	O.I.	H.G.	S.X.	Please select
0.28	39.0	Gma.16500.2.S1_at	At4g32590	-	-	3e-2	At1g03680	ATHM1	O.I.	H.G.	S.X.	Please select
0.28	39.0	Gma.16474.2.S1_at	At4g32590	-	-	2e-45	At5g09930	ATGCN2	O.I.	H.G.	S.X.	Please select
0.28	39.0	GmaAffx.55586.1.S1_at	At4g32590	-	-	6e-6	At4g04850	KEA3	O.I.	H.G.	S.X.	Please select
0.28	39.0	GmaAffx.13732.1.A1_at	At4g32590	-	-	6e-6	At5g10470	kinesin motor protein-related	O.I.	H.G.	S.X.	Please select
0.26	33.9	Gma.1398.1.S1_x_at	At4g32590	-	-	1e-20	At1g16080	unknown protein	O.I.	H.G.	S.X.	Please select
0.24	30.9	Gma.13894.1.A1_at	At4g32590	-	-	8e-1	At1g47770	beta-galactosidase	O.I.	H.G.	S.X.	Please select
0.23	29.9	Gma.1398.1.S1_at	At4g32590	-	-	1e-20	At1g16080	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	28.1	Gma.6218.1.S1_at	At4g32590	-	-	2e+0	At2g04170	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	O.I.	H.G.	S.X.	Please select
0.21	26.6	Gma.6810.1.A1_at	At4g32590	-	-	1e-10	At3g27820	MDAR4 (MONODEHYDROASCORBATE REDUCTASE 4)	O.I.	H.G.	S.X.	Please select
0.21	26.6	GmaAffx.58510.1.S1_at	At4g32590	-	-	1e-35	At1g73110	ribulose bisphosphate carboxylase/oxygenase activase, putative / RuBisCO activase, putative	O.I.	H.G.	S.X.	Please select
0.20	25.1	Gma.11874.2.S1_at	At4g32590	-	-	4e-9	At1g80030	DNAJ heat shock protein, putative	O.I.	H.G.	S.X.	Please select
0.17	21.2	Gma.11402.1.S1_at	At4g32590	-	-	4e-29	At5g08650	GTP-binding protein LepA, putative	O.I.	H.G.	S.X.	Please select
0.16	19.7	Gma.15822.1.S1_at	At4g32590	-	-	2e-12	At2g20920	unknown protein	O.I.	H.G.	S.X.	Please select
0.14	17.5	GmaAffx.17650.2.S1_at	At4g32590	homogentisate phytyltransferase VTE2-2	-	2e-5	At3g11945	homogentisate farnesyltransferase/ homogentisate geranylgeranyltransferase/ homogentisate solanesyltransferase	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage