Co-expression analysis

Gene ID	Contig16411_at
Gene name
Homology with Arabidopsis	Similar to At4g01883: - (HF=5e-1)
Module size	6 genes
NF	0.55
%ile	75.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.95	Contig16411_at	Contig16411	-	-	5e-1	At4g01883	-	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.96	Contig16668_at	Contig16668	-	-	5e-1	At2g32100	OFP16 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 16)	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.96	HB23O15r_s_at	HB23O15r	-	-	5e-1	At2g05370	-	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.92	EBed02_SQ003_G01_at	EBed02_SQ003_G01	-	-	3e+0	At2g33750	ATPUP2	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.98	Contig25521_at	Contig25521	-	-	1e+0	At3g55830	EPC1 (ECTOPICALLY PARTING CELLS)	O.I.	H.G.	S.X.	Please select
0.37	47.9	0.92	Contig5127_s_at	Contig5127	-	-	4e-2	At1g68580	agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.2	98.7	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.8	98.3	GSM440978	Stressed seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress
6.3	98.1	GSM261042	before 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.1	98.0	GSM238417	Endosperm 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.0	97.9	GSM419982	Seed_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
6.0	97.9	GSM440976	Control seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
5.7	97.7	GSM440980	Stressed seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
5.1	97.3	GSM440979	Stressed seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
4.9	97.1	GSM419981	Seed_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
4.9	97.1	GSM440975	Control seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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