Co-expression analysis

Gene ID Contig16350_at
Gene name
Homology with ArabidopsisSimilar to At3g57390: AGL18 (HF=9e-3)
Module size 8 genes
NF 0.10
%ile 12.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9398.70.89Contig16350_atContig16350--9e-3At3g57390AGL18O.I.H.G.S.X.
0.5774.90.94Contig16351_atContig16351--5e-1At4g13480AtMYB79 (myb domain protein 79)O.I.H.G.S.X.
0.097.40.94Contig8100_atContig8100--1e-24At5g22000RHF2A (RING-H2 GROUP F2A)O.I.H.G.S.X.
0.086.50.95Contig2937_s_atContig2937--9e-27At3g25800PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2)O.I.H.G.S.X.
0.086.50.95Contig1730_s_atContig1730--4e-19At3g01150PTB1 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 1)O.I.H.G.S.X.
0.075.80.94Contig5296_atContig5296--4e-25At1g64550ATGCN3O.I.H.G.S.X.
0.054.10.94Contig15411_atContig15411--2e-4At5g49890CLC-C (CHLORIDE CHANNEL C)O.I.H.G.S.X.
0.032.60.94Contig5115_atContig5115--3e-6At2g32600hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.299.5GSM238427Endosperm 72 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
12.999.4GSM238422Endosperm 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
8.698.8GSM213441Barley seeds control in Hoagland solution for 12hrGSE8618P. aeruginosa virulent factor to barleyLink to GEO
4.897.0GSM440978Stressed seed_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO
4.696.8GSM238425Endosperm 48 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.596.7GSM238431Embryo 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.496.6GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.496.6GSM238426Endosperm 72 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.296.3GSM238430Embryo 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.692.3GSM238429Embryo 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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