Co-expression analysis

Gene ID Contig16344_at
Gene name
Homology with ArabidopsisSimilar to At3g15410: leucine-rich repeat family protein (HF=2e+0)
Module size 6 genes
NF 0.61
%ile 82.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6077.30.90Contig16344_atContig16344--2e+0At3g15410leucine-rich repeat family proteinO.I.H.G.S.X.
0.8394.00.89Contig20244_atContig20244--2e-4At4g37200HCF164O.I.H.G.S.X.
0.7388.70.90Contig15381_atContig15381--5e-14At5g14040mitochondrial phosphate transporterO.I.H.G.S.X.
0.7388.70.92Contig7157_atContig7157--2e-11At2g24500FZFO.I.H.G.S.X.
0.4458.90.92Contig12173_atContig12173--7e+0At5g10710protein bindingO.I.H.G.S.X.
0.2122.60.91Contig5032_atContig5032--4e-1At4g38210ATEXPA20 (ARABIDOPSIS THALIANA EXPANSIN A20)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
24.499.8GSM281749Genotype: Morex - rep2GSE11182Steptoe x Morex seedling leaf comparisonLink to GEO
24.399.8GSM281748Genotype: Morex - rep1GSE11182Steptoe x Morex seedling leaf comparisonLink to GEO
12.999.4GSM281750Genotype: Morex - rep3GSE11182Steptoe x Morex seedling leaf comparisonLink to GEO
7.098.4GSM419976Palea_Rep2GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
7.098.4GSM440964Control palea_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO
3.194.1GSM261027ABA-Late-rep1GSE10328ABA experimentLink to GEO
3.093.8GSM261022ABA-Control-rep2GSE10328ABA experimentLink to GEO
2.993.4GSM419977Palea_Rep3GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
2.993.4GSM440965Control palea_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
2.993.4GSM261021ABA-Control-rep1GSE10328ABA experimentLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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