Co-expression analysis

Gene ID	Contig16322_at
Gene name
Homology with Arabidopsis	Similar to At5g57500: transferase, transferring glycosyl groups (HF=5e+0)
Module size	7 genes
NF	0.52
%ile	72.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.57	74.9	0.95	Contig16322_at	Contig16322	-	-	5e+0	At5g57500	transferase, transferring glycosyl groups	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.95	Contig18288_at	Contig18288	-	-	1e+0	At1g73325	trypsin and protease inhibitor family protein / Kunitz family protein	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.95	Contig10292_at	Contig10292	-	-	9e-23	At1g07650	leucine-rich repeat transmembrane protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.52	68.3	0.95	Contig10891_s_at	Contig10891	-	-	7e-1	At3g50695	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.95	Contig13879_at	Contig13879	-	-	6e-4	At4g38620	MYB4	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.95	Contig10690_at	Contig10690	-	-	2e-5	At2g35530	bZIP transcription factor family protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.95	Contig13528_at	Contig13528	-	-	9e-9	At1g29690	CAD1 (constitutively activated cell death 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.1	96.2	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.4	94.8	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
3.1	94.1	GSM419977	Palea_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
3.1	94.1	GSM440965	Control palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
2.9	93.4	GSM282034	Malting_steeped_Morex_rep1	GSE11200	Expression data from malting barley seeds
2.7	92.7	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
2.7	92.7	GSM419976	Palea_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
2.7	92.7	GSM440964	Control palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
2.7	92.7	GSM419973	Lemma_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
2.7	92.7	GSM440958	Control lemma_Rep2	GSE17669	Gene expression in the barley spike during drought stress

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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