Co-expression analysis

Gene ID	Contig1626_s_at
Gene name	cytosolic triosephosphate isomerase
Homology with Arabidopsis	Similar to At3g55440: TPI (TRIOSEPHOSPHATE ISOMERASE) (HF=2e-19)
Module size	20 genes
NF	0.37
%ile	51.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.62	79.1	0.95	Contig1626_s_at	Contig1626	cytosolic triosephosphate isomerase	-	2e-19	At3g55440	TPI (TRIOSEPHOSPHATE ISOMERASE)	O.I.	H.G.	S.X.	Please select
0.65	81.4	0.96	Contig660_s_at	Contig660	-	-	1e-37	At1g09200	histone H3	O.I.	H.G.	S.X.	Please select
0.54	70.3	0.96	Contig13413_at	Contig13413	-	-	1e+0	At3g46210	3' exoribonuclease family domain 1-containing protein	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.96	Contig21333_at	Contig21333	-	-	3e-1	At2g43350	ATGPX3 (GLUTATHIONE PEROXIDASE 3)	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.96	HVSMEc0012C14r2_at	HVSMEc0012C14r2	-	-	3e-1	At5g46920	intron maturase, type II family protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.96	Contig20359_at	Contig20359	-	-	2e+0	At4g26110	NAP1	O.I.	H.G.	S.X.	Please select
0.42	55.2	0.96	Contig6467_at	Contig6467	-	-	7e+0	At3g53020	STV1 (SHORT VALVE1)	O.I.	H.G.	S.X.	Please select
0.39	50.5	0.96	HVSMEi0002I06r2_x_at	HVSMEi0002I06r2	-	-	3e+0	At3g02220	unknown protein	O.I.	H.G.	S.X.	Please select
0.37	47.9	0.96	Contig18484_at	Contig18484	-	-	7e+0	At5g64480	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.96	Contig5664_at	Contig5664	-	-	1e-2	At1g25450	KCS5 (3-KETOACYL-COA SYNTHASE 5)	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.96	Contig13538_at	Contig13538	-	-	2e+0	At4g36430	peroxidase, putative	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.96	Contig5893_at	Contig5893	-	-	1e-52	At1g04170	EIF2 GAMMA	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.97	Contig6751_at	Contig6751	-	-	1e+0	At3g04990	-	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.96	Contig9013_at	Contig9013	-	-	4e-20	At1g80230	cytochrome c oxidase family protein	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.96	Contig12398_at	Contig12398	-	-	2e-1	At2g31240	tetratricopeptide repeat (TPR)-containing protein	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.96	Contig5792_at	Contig5792	-	-	2e+0	At2g31730	ethylene-responsive protein, putative	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.96	Contig14329_at	Contig14329	-	-	4e-4	At1g04870	PRMT10	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.96	Contig725_s_at	Contig725	-	-	1e-15	At1g21750	ATPDIL1-1 (PDI-LIKE 1-1)	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.96	Contig1512_at	Contig1512	-	-	0	At5g12250	TUB6 (BETA-6 TUBULIN)	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.96	Contig3873_at	Contig3873	-	-	3e-20	At1g01060	LHY (LATE ELONGATED HYPOCOTYL)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
16.9	99.6	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
9.8	99.1	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
8.8	98.9	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
7.6	98.6	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.3	96.4	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.1	96.2	GSM363461	Control (C) - rep2	GSE14521	Late response to boron toxicity in barley leaves
3.9	95.8	GSM363465	5 mM B(OH)3 treatment (5B) - rep3	GSE14521	Late response to boron toxicity in barley leaves
3.5	95.1	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
3.0	93.8	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.9	93.4	GSM440968	Stressed palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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